Etheostoma spectabile (orangethroat darter): 116703104
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Entry
116703104 CDS
T08457
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03030
DNA replication
esp03410
Base excision repair
esp03420
Nucleotide excision repair
esp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116703104 (rfc1)
03410 Base excision repair
116703104 (rfc1)
03420 Nucleotide excision repair
116703104 (rfc1)
03430 Mismatch repair
116703104 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
esp03032
]
116703104 (rfc1)
03400 DNA repair and recombination proteins [BR:
esp03400
]
116703104 (rfc1)
DNA replication proteins [BR:
esp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116703104 (rfc1)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116703104 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_30
Rad17
RuvB_N
AAA_17
AAA_14
AAA_33
BRCT_2
AAA_7
AAA_18
AAA_16
nSTAND3
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
116703104
NCBI-ProteinID:
XP_032393613
LinkDB
All DBs
Position
2:14333962..14346838
Genome browser
AA seq
1182 aa
AA seq
DB search
MDIRRFFAPTSSKPSEQKPAPNGNIKTEEEEKEKKKKKKNPPSSNEEVKKKETSKGKSSK
PKETRKDSEKKRKKHAVIESDSEDEEPARKSKKSPKEKKKMSQTEPPPKKDPVQYVSETD
SDSDNFRSLKKVSEPKQNGTAKQTKSDAVSARPGVKAGMKSPAKPSSTQGKTSVKSPPVP
VTPKSAPPPPLKRTPTSVLDYFGTTSVQRSDKKLVASTKRKAPTQDTDDLMSDEQIAKQL
QLDEDMELEKQVHEDEEFARTLAMLDEEPQAKKARKGSDEKSVATACPKKSSPSKTNRKG
SMSEDVISPSPKKNPAPIKASSKLAMMKKKEEEREERPKSKTPISPTKIKLSPKNEPLPL
PNSGQRFTPKTETTPTTLKTSPKKPESTSVSPDDSEKKKVNSAAYRNFLNRDGPRALGSK
EIPQGAENCLEGCVFVLTGVMESMERDDAKSLIERYGGKVTGNISKKTTYLVQGRDSGVS
KLEKAESFGTKILDEDALLELIRTKPGKKSKYEIAAEAETTASKTRTPPSKTLKRTPKAQ
KISPSKGNSRSPHTPSPSKTGLAQGHGTRTRDGCTPPGRGSGHTARRELGLPPSTSTSSA
PGPSSPSSTYDNASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWYRHHSGGSSKP
PVARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLK
EVVSESLNNTSIESFYKGTSQKVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIRNSKIPI
ICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEMILASN
QDVRQVIHNLSMWSAKNKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGEETAHMSLI
DKSDLFFHDYSLAPLFVQENYLHVRPKAAGGDLKSHLMLLSKTADSICDGDLVDRQIRSR
QNWSLLPTQAIYASVLPGELMKGYMSQFPNFPSWLGKNSSTSKHSRIVQELASHMCLKTM
SSRQAVNLDYLYYLRQALLSPLQRRGVEGAGEAVQLLDNYQLIKEDVDSIMEISVWGGQP
DPYSKLDSKVKAAFTRAYNKEAHLTPYSLQAVKKGRRGGESEFGREGMDNEVQESEDEGL
TTDAMIKQKKAKATKESKKEKKEDSGKGKGTSKGKGKAKAKK
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacttcgtccaagccttcagagcagaaaccagct
ccaaatggaaacatcaaaacagaggaggaggagaaggagaagaagaagaagaagaagaat
cccccttcatcaaacgaggaagtgaaaaagaaagagaccagcaaggggaaaagctccaaa
ccaaaggagacacgcaaagatagtgagaaaaaacgaaagaagcatgcagtcatagaatca
gactctgaggatgaggagccagcaaggaagtcaaaaaaatcaccaaaagagaaaaagaag
atgagccaaactgagccacctcccaaaaaagatcctgtgcagtatgtctctgaaacagac
tcggacagcgacaactttcggtccttaaagaaggtgtctgaacctaagcagaatggcacg
gccaaacagacaaagtcagatgcagtaagtgctcgtccaggagtcaaagcggggatgaag
tcccctgccaagccctcctccacacagggaaaaacttcggtcaagtctcctcctgtgcct
gtcacccctaaatcagccccgcctcctccgctcaaacgaacccccacttcagtactcgac
tacttcggcactacgagtgttcagcgctcagacaagaagctcgtagccagcaccaagcga
aaggctccaactcaggacacagatgatctcatgagtgatgagcaaatcgccaaacagctg
cagttggatgaggacatggagctggagaaacaggtccatgaggacgaggagtttgccaga
actctggctatgctggacgaggagcctcaagcaaagaaggctcgtaaaggctccgatgaa
aaatcagttgcaaccgcatgtcccaaaaagagcagcccttcaaagaccaaccgaaagggc
agcatgtcagaagacgtgattagtccgtctcctaagaagaaccctgctcccatcaaagcc
agctccaaactggccatgatgaagaaaaaggaagaagagagagaagaaaggccaaagagt
aaaacgccaatttcacctacaaaaataaaactctctcccaaaaacgagcccctccctttg
ccaaactcaggccagaggtttactcccaagacagaaaccacacccaccacattaaaaact
tctcccaagaaaccagagagcacgagtgtgagtcctgatgattcagagaagaagaaggtc
aactctgcagcttacaggaacttcttaaaccgcgatggaccacgagctctgggctccaag
gaaatcccacagggtgcagagaactgtttggagggctgtgtgtttgtgctgacgggggtc
atggagtccatggaaagggatgatgccaaatccctcattgagcgctacggaggcaaggtg
acaggcaacatcagcaagaagaccacctacctggtgcagggcagagacagtggagtctcg
aagcttgagaaggcggagagtttcggtactaagatcctggatgaggatgctctgctggag
ctgatcagaaccaaaccaggaaagaagtccaagtacgagatcgctgcagaggctgagacc
acagcctcaaagaccaggactccccccagcaaaacattaaaaagaacccccaaagcccag
aagatctctccctccaaggggaattccaggtcccctcacaccccgagcccgtctaagaca
ggcttggcccaaggccacggtaccaggaccagagatggctgcactccacctgggagaggc
tcaggccacacagcccggagggagctgggccttcccccctccacttctacatcttcagct
ccaggaccatcatctccatcatcgacatatgacaacgccagtctgctgtgggtggacaag
taccgcccacgctctctgaagactgtgattggtcaacagggggatcagagctgtgccaat
aagctgctccgctggctgcagaactggtacagacaccacagcgggggctcttccaagcca
ccagttgcaaggtttggtaagtttggaggaaaagatgatggatctggattcaaagctgct
ctgctctctgggcctccgggcgtgggtaagaccaccacagctgcgctggtctgtgaggaa
ttgggcttcagctacgtggagatgaacgccagctgtactcgcagcaaaaacagtctgaag
gaagtcgtctcagagtcacttaacaacaccagcattgagagcttctacaaaggcacgtct
cagaaagtgagcagtaaacacgtcctgatcatggatgaggttgatggcatggctggcaac
gaggaccgtggagggatccaggagatgatcggcctgatcagaaattcaaagattcccatc
atctgcatgtgcaacgaccgtaaccaccagaagattaggtcactggccaactactgctat
gatttgcgcttccagaggccgcgagtggaacagatcaagggagcaatgatgtccctcgct
ttcaaggagggaatcaagatcccacccccagctcttaatgaaatgatccttgcctccaat
caggatgtccgacaggtgatccacaacctgagcatgtggtcggccaaaaacaaggtgatg
acctatgaccagtgtaagtctgacgcagccagcgctcgcaaggacatgaaactgggtccg
tttgatgtttgtaggaaggtatttgcctcaggggaggagactgcccacatgagcctcatc
gacaagtctgacctcttcttccacgactactcgctagcgccactcttcgtccaagagaac
tacctgcatgtccgaccaaaggctgcaggtggtgacctgaagtcccacctgatgttgctg
agcaagacagctgactccatctgtgacggagacctagtggacagacagatccgctctcgg
cagaactggtcactcttgcccacacaggccatctatgccagtgtgttaccaggggagctc
atgaaaggctacatgagtcagttccccaacttccccagttggctcggcaagaactcctcc
accagcaaacactcccgcatcgtccaggagctggcctcgcacatgtgcttaaagacgatg
agcagcagacaggcagtgaacctggactacctgtactacctgcggcaggcgctgctgagc
ccgcttcagaggcgcggagtggagggcgccggcgaagctgtacagctgctggacaactac
cagctcatcaaggaggatgtggacagcatcatggagatcagtgtctggggcgggcaacca
gacccttactccaaactggactccaaggtgaaggcagcattcacacgagcctacaacaaa
gaagctcacctgacgccatactctctgcaagcagtaaagaagggccgccgcgggggggag
tctgagttcggaagagagggcatggacaacgaagtgcaggagtctgaagacgagggcctc
acaaccgacgccatgatcaaacagaagaaggccaaagccaccaaagagtcaaagaaagag
aagaaggaagattctggaaagggcaaggggacaagcaagggcaagggcaaggccaaagcc
aagaaatga
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