Etheostoma spectabile (orangethroat darter): 116703513
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Entry
116703513 CDS
T08457
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116703513
04518 Integrin signaling
116703513
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116703513
09142 Cell motility
04820 Cytoskeleton in muscle cells
116703513
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116703513
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116703513
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
116703513
NCBI-ProteinID:
XP_032394176
LinkDB
All DBs
Position
15:complement(642987..667501)
Genome browser
AA seq
1447 aa
AA seq
DB search
MFSFVDLRLALLLGAAVLLVRAQGEDDRTGGSCTLDGQVFADRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPVIPHDECCPICPDDGYQEPQVEGPKGERGPKGDRGPVGAPGND
GIPGQPGMPGPPGPPGPPGLGGNFSPQMSGGYEDKSPAMAVPGPMGPMGPRGPPGPPGSS
GPQGFTGPPGEPGEAGAAGAMGPRGPAGPPGKNGEDGESGKPGRGGERGPSGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGDTGPSGPKGEAGAPGENGTPGAMGPRGLPGERGRTGAS
GAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGSKGEAGPQGARGSEGPAGSRGEPGNP
GPAGPAGPSGNPGTDGAAGPKGNPGAAGVAGAPGFPGPRGPPGPQGAGGAPGAKGNNGDV
GAPGSKGEAGAKGEAGVPGAQGPPGPSGEEGKRGARGEPGAAGARGGPGERGAPGGRGFP
GSDGTAGPKGATGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGSPGSPGPDGKMGPA
GNAGQDGRPGPPGAVGARGQPGVMGFPGPKGAAGDAGKTGERGVMGPTGPNGAPGKDGDV
GAQGPAGPAGPAGERGEQGPSGAPGFQGQPGPAGAVGESGKPGEQGVPGEAGAQGPAGAR
GDRGFPGERGAPGVIGPAGARGSPGAAGNDGAKGDAGAPGNPGAQGPPGLQGMPGERGAA
GLPGLRGDRGDQGAKGADGAPGKDGPRGLTGPIGLPGPAGANGDKGEAGTAGPVGPAGSR
GAPGERGESGPPGPAGFAGPPGADGQPGAKGESGDNGAKGDAGSPGPAGPTGAPGPQGPV
GNTGPKGARGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPAGPAGKEGPKGNRGDTGPA
GRPGELGAAGPPGPAGEKGNPGAEGAPGSSGLPGPQGINGQRGIVGLPGQRGERGFPGQP
GPSGEVGKPGPSGPGGERGPPGPMGPSGLAGAPGEPGREGSPGNEGSAGRDGAAGPKGDR
GESGPSGAPGAPGPSGAPGPVGPAGKTGDRGDSGAAGPAGPAGPAGPRGPAGAPGLRGDK
GETGEAGERGMKGHRGFTGMQGPPGPAGSNGEMGPAGAAGPAGPRGPAGSAGSAGKDGMT
GLPGPTGPSGPRGRSGEMGPAGPPGPPGPPGAPGAPGGGFDLGFISQPQEKAPDPFRSYR
ADDANVLRDRDLEVDGTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWID
PDQGCTQDAIKVYCNMETGETCVSPTQRVVAQKNWYMSKNIKEKKHVWFGEAMTDGFQFE
YGNDGSAPEDVNIQLTFLRLMSTEATQNLTYHCKNSVAYMDASAGNLKKALLLQGSNEIE
IRAEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGLE
IGPVCFL
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctggcgctgctgctcggcgcagcggtgctcttggtt
agagcgcagggcgaggacgaccgcacaggcggcagctgcaccctggatggccaggtgttt
gccgaccgagacgtgtggaagcccgagccatgccagatctgcgtgtgcgacagcggcacg
gtgatgtgcgatgaggtcatctgcgaggacacgaccgactgccccaaccccgtcatcccc
cacgacgagtgctgccccatctgccccgacgatggctaccaggagcctcaggttgaggga
cccaaaggagagcgtggacccaagggagacaggggtcctgttggtgccccaggtaatgat
ggtatccccggccagcctggaatgcctggacctcccggcccccctggaccccccggcctc
ggtggaaacttctcccctcagatgtctggtggctacgaggataaatctcctgccatggct
gtgcctggaccaatgggcccaatgggaccccgtggaccccctggacctcctggttctagc
ggacctcaaggattcacaggcccccctggtgagcctggagaggctggagctgctggcgcc
atgggtccccgtggccccgccggaccccctggaaagaacggagaggatggtgagtctggc
aaacctggacgcggcggtgagcgcggaccctctggcccacagggagctcgtggtttccca
ggaacccccggtctgcccggcatcaagggacacagaggattcagcggtctggatggtgct
aagggagacactggcccttctggtcccaagggagaggctggagcccccggtgagaacgga
actcctggagctatgggacctcgtggtctgcctggtgagagaggccgcactggtgcttct
ggagctgctggcgctcgtggtaacgatggtgctgccggtgctgctggacctccgggtccc
actggccccgctggacctcctggattccccggcggccctggatccaagggtgaagctgga
ccccagggtgctcgtggatctgagggacccgctggatcccgtggtgagcccggtaacccc
ggacctgctggccctgctggaccttctggaaaccctggaactgatggagccgccggacca
aagggaaatcctggtgctgctggagttgccggagctcctggtttccccggaccccgtgga
cccccaggacctcagggtgctggaggtgcccccggagccaagggtaacaatggtgatgtt
ggtgccccaggatccaagggagaagctggtgccaagggagaggctggtgttccaggagct
caaggaccccctggaccttccggtgaggagggcaagagaggagccagaggagagcctggt
gctgcaggagcccgtggaggtccaggagagcggggtgcccctggtggtcgtggtttccct
ggttctgatggtactgctggacccaaaggtgccactggcgagcgcggtgcccccggtctt
gttggacctaaaggttctactggtgagcctggtcgcactggtgagcctggtttgcccgga
gctaagggtatgactggtagccctggtagccctggacctgatggcaagatgggacccgct
ggaaatgctggacaagatggccgccctggaccccctggcgccgttggagctagaggccag
cctggagtcatgggattccctggacccaaaggagctgctggtgatgctgggaagactggc
gagagaggagtgatgggacccactggccccaatggtgcccctggaaaggacggtgatgtt
ggtgctcaaggccccgctggacctgctggacctgctggtgagagaggagagcagggacct
tccggagctcctggattccagggacaaccaggacccgcgggtgctgttggtgagagtggc
aagcccggagagcagggtgtgcccggtgaggctggagcccaaggacctgctggagctaga
ggtgacagaggattccccggtgagcgtggtgcacccggtgttattggacccgctggtgcc
cgtggatcccctggagctgctggaaacgatggtgctaagggagatgctggagcccccggt
aaccccggagcccagggtcctcctggactgcagggaatgcctggtgagcgtggtgctgct
ggccttccaggactgaggggagacagaggtgaccaaggagccaagggtgctgatggagct
cctggtaaggatggcccccgtggtttgactggaccaattggacttcccggacctgctgga
gccaacggagacaagggagaggctggtactgctggacctgtcggacctgccggatctcgc
ggagcccctggtgagcgcggagagtctggaccacctggacctgctggattcgctggacct
cctggtgctgatggccagcctggtgctaagggagagagtggagataatggtgcgaaggga
gatgctggttcccccggccctgctggacccactggtgcccctggacctcagggtcccgtt
ggaaacaccggccctaagggagcccgcggagctgctggaccacctggtgctactggcttc
cctggtgctgctggcagagttggacctcccggcccctctggcaacgccggaccccccgga
cccgctggacctgctggcaaagagggacccaaaggaaaccgtggtgacactggacctgct
ggtcgccctggtgagcttggtgctgctggacctccaggacctgctggagagaagggtaac
cctggtgctgagggtgctcccggaagttctggtctgcctggacctcagggtatcaatgga
cagcgtggtattgttggtctgcccggacaaagaggagagagaggtttccctggccagcct
ggaccttctggagaggttggaaagcctggaccttctggccccggtggcgagcgtggacct
cccggacccatgggaccttctggactggctggagcccccggtgagccaggacgtgaggga
agccccggtaacgagggatcagccggtcgcgatggagctgctggacccaagggagaccgt
ggagagagcggtccttctggagcccctggtgcccctggaccctctggtgcccctggacct
gttggacccgctggaaagaccggtgatcgtggagactctggagctgctggccccgctggc
cctgctggccctgctggacctcgtggccctgctggagctcctgggcttcgtggagacaag
ggagagaccggagaggctggagagagaggcatgaagggacacagaggattcactggcatg
cagggacctcctggaccagctggatcaaacggagagatgggacctgctggtgctgctgga
ccagctggacctagaggccctgctggatctgctggatctgctggtaaggatggtatgact
ggcctgcctggtcccactggaccttctggacctcgtggacgttccggagaaatgggacct
gctggtcctcccggacctcctggacctcccggtgcacctggtgcccccggtggcggattc
gacctcggcttcatttcccagcctcaggagaaggcccccgatcccttccgctcataccgc
gctgacgacgctaacgttctccgtgaccgcgacctggaggttgatggcaccctgaagagc
ctgagccagcagatcgagcagatccgcagccccgacggaacccgcaagaaccccgccaga
acctgccgggacctcaagatgtgccacccagactggaagagcggcgagtactggatcgac
cccgaccagggctgcacacaggacgccatcaaggtctactgcaacatggagaccggagag
acctgcgtatccccaactcagcgcgtggtcgcccagaagaactggtacatgagcaagaac
atcaaggagaagaagcacgtctggttcggagaggctatgaccgacggcttccagttcgag
tacggcaacgatggctctgccccagaggacgtcaacatccagctgaccttcctgcgtctc
atgtccactgaggcgacccagaacctcacctaccactgcaagaacagcgtcgcctacatg
gacgcctccgccggcaacctcaagaaggccctgctcctccagggctccaacgagattgag
atcagagccgagggcaacagccgcttcacctacagcgtcctggaagacggatgcacgtca
cacaccggcacatggggcaagacagtcatcgactacaagacatcgaaaacatctcgcctg
ccaatcattgacatcgctcctatggacgttggtgctccagaccaagagtttggccttgaa
attggacccgtctgcttcttgtaa
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