Etheostoma spectabile (orangethroat darter): 116703661
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Entry
116703661 CDS
T08457
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116703661 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116703661 (xab2)
03041 Spliceosome [BR:
esp03041
]
116703661 (xab2)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116703661 (xab2)
Spliceosome [BR:
esp03041
]
Complex B
Other components
Prp19-related factors
116703661 (xab2)
Complex C
116703661 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
NRDE-2
TPR_1
Tcf25
N_NLPC_P60
SNAP
Motif
Other DBs
NCBI-GeneID:
116703661
NCBI-ProteinID:
XP_032394445
LinkDB
All DBs
Position
15:11483665..11491115
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLSGKPDVLFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPSYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAELGKDEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKHVDDLSAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVEAEERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSAQMLKATTSSTVSDLAPGQMEIDDMKMLEQKAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELSKQANPDEIDIDEDEDEDDDENQGPEEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaagtggaaaacccgatgttctgtttgaggacgatgatctgccttatgaa
gaggagattatcaggaacccatactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaacggagccaaatccaccctcaacatgatatatgagcgggctctgaaggagctgcct
ggcagctacaaactgtggtacaattatctgagagaaagacggaaacaagtcaaagggaaa
tgtatcactgaaccaagctatgaagagatcaataattgccatgaaagggcattggttttc
atgcacaagatgcctagaatatggcttgattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgctctcagagctcttccggttactcaacac
ccacgcatctggcctctctatctccgctttgtgcgtaacctgcccctgcctgagactgcc
atccgggtgtaccgcaggtaccttaagctttctccagagaatacagaagaatacatagac
tacttacggtctgttggccgcttggatgaagcagctgtgcgactagcagctgttgtcaat
gacgaaagctttgtctccaaagagggcaagtctaattatcaactgtggcatgagctatgc
gacctgatctcccagaaccctgataaagtgacctctctaaatgtaggagccatcatccga
ggaggcctcactagattcacagaccaacttggaaaactctggtgctctttagctgactat
tacatcaggagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatccttaca
gtggtaacagtaagggatttcacacaagtgtttgatagttacgcccagtttgaagagagc
atgattgcagcaaagatggagaccaccgctgagctgggaaaggatgaagatgaggacata
gacatggagcttagactggcccgttttgagcagctgatagcccggcggccccttcttttg
aacagtgttctactgcgccagaaccctcataatgtccatgagtggcacaagcgggtaaaa
ctgtatgagggcaatccacggcagatcatcaacacatacactgaggcagtgcagactgtg
gatccgatgaaggccacagggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggccaccaaggtgaac
tacaagcacgtagatgacctttctgcggtgtggtgtgagtatggagagatggagctacgt
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatccaag
aaagcggagtactttgatgcatctgagccagtccaaaacagagtttacaagtccttgaag
gtctggtctatgctggcggacttggaagaaagtcttggcactttcaagtctacaaaagca
gtgtatgatcgcatcattgacctccgcatcgccacgccacagatcatcatcaattacgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatt
gctctcttcaggtggccaaatgtttatgacatctggaacacatacctcaccaagtttatt
gatcgttatgggggcaagaagctggagagagctagagatttatttgagcaagccctagat
ggctgccctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga
tatggattggcacgacacgccatggctgtctatgaaagagcaacgcaggcagtagaagct
gaggagagacatcaaatgttcaatatctacatcaagagagcagctgaaatttatggagtc
acgtataccagggcaatttaccagaaagctatcgaggtccttcctgatgaacatgcaagg
gacatgtgcctgcgatttgctgacatggagagtaaacttggtgagattgatcgggccaga
gcaatttactcctactgttcccaaatctgtgacccaagggtgactgcaaacttctggcag
acatggaaagaatttgagatccgccatgggaatgaggacacaataagagaaatgctgagg
atcaaacgtagtgtccaagccacatacaacacccaggtcaactttatgtctgctcagatg
ctgaaggctacgacaagctccacagtgtcagatcttgctccaggccaaatggaaattgat
gacatgaagatgctggagcagaaagcacagcagcttgctgcagaggccgagcaggacaaa
cccaaactcaaagaaaaaattctctttgtcaggagtgacacctctcgcagtgagttggct
gagctttccaaacaggccaaccctgatgagattgacattgatgaggatgaggatgaagat
gatgatgaaaaccagggaccagaagaggtgcagcttgaacagaagagtgtccccacagct
gtctttggagggcttaaagatgactga
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