Etheostoma spectabile (orangethroat darter): 116703924
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Entry
116703924 CDS
T08457
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
esp03000
]
116703924 (rc3h2)
04121 Ubiquitin system [BR:
esp04121
]
116703924 (rc3h2)
Transcription factors [BR:
esp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116703924 (rc3h2)
Ubiquitin system [BR:
esp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116703924 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
116703924
NCBI-ProteinID:
XP_032394905
LinkDB
All DBs
Position
16:complement(8544557..8571455)
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AA seq
1169 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQLVSLSSAAEVENYEVCKVCVEELALYLKPISGAKELSP
FAGVANLSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQ
QLSANLWAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQA
SKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLR
ISPEQWSSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHL
ELLANIDHNPDAPAPSWEELESVMLAVKMVVHGLVEFIQNFSKKSHDAPQPQANSKYKTS
MCRDLRQQGGCPRGTNCTFAHTQDELEKFRLRNKKSSGVGCAFPLAPGVMGKTFTMEGSI
HSDVSAGMGQGLNGTGENTDSLTEGMPGLTHPQLISRGADMMEEMNRTVPNESNDAKGSN
GLTTRNSSGSTEQKSISPPRTPVSHSSASSPLTTVGRVDAGTLMPKHGQFMLRAPHPSQA
SELYYQEPHSAYESPHYQPNSGSYYQSSLHPPHKPCMARFLRSTNVPESSLPPSIGPPSS
SYPSDPQAQHPPSSSSSGYPPHLPRDRMGPTAFHHHPGQPQYGPLAPAHGVYAPLYDSRR
VWRPQLYHREDARSNSLPPEVLHSSVYQPPLRERFNSLDSNYCSGAEHRTGLHRDYGRVP
LGYEDLFRRKQEQWAHHHHHHNANRPSQSSPIFTIDFGSERVEGSGGQCVGCRFRGEESL
AHYSPWSCGTIGPCLGSFEPETLTHTSAHSCSEHSESDSNAAGGGGGGGGGGSSGGVGKR
WLQSLDHYRRLKDEDPIIPFSEGPIISKWGAISRASRTGYHTTDPIQATACQGSANTTPI
NFKDYNHHLDHSDYRWSSRGSDSSSHSSFLESEQLCASELHCCRTSISSGEKIVSDLQVC
QTAYSRDRGQGESEPDPDRDIELELCALDLEDSDHQDSQVSGWYNDESLDLVTPQSQDAS
HLRPPPCSSPLLSSPVEEQPQTEGFSTEKIDSHLLKKMAFRKSLSPGGLVSGGLGVGKLV
LRTGPPRLGDTSTRACPKMPGTEMLLNGS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggacagagttcctgtcctgtcccatctgctacaatgag
tttgacagcagcggccaccagcccatcagcctgggctgttcccacactgtgtgtaagacc
tgcctacacaaactgcaccgcaaggcctgcccctttgatcagacgccaatcagcaccgat
atcgacctgctgccagtcaactgtgccctgctgcagctggttggtgctcaggtcccagat
gtgcagctcgtgagcctgagcagtgcagcagaagttgagaactacgaggtgtgcaaggtg
tgcgtggaagagctggctctttacctaaaacctatcagcggagcaaaagagctgtcacca
tttgcaggtgtggcgaatctgagtccgagcgtgctcagccggccaatgcagaggaagctg
gtgaccttggtgaactgccagctggtggaggaggagggccgtgtgcgggcagtgcgggca
ggccggtcgctgggggaacgaacggtaaccgagctcatcctgcaacaccagaacccccag
cagctctctgccaacctgtgggcagcagtgagagcgcggggctgccagttcctgggacct
gctatgcaagaagatgctctgaagctagttttactggctctggaggacggctcagctttg
tccaggaaggtgttggtattgttcgtagtccaaaaactagaagctcggttcccccaggcc
tccaaaaccagcatagggcacgtggtgcagcttctctacagggcttcctgcttcaaggtg
actaagcgtgatgaagactcctcactgatgcagctgaaagaagagtttcgaacgtatgaa
gctctgcggagagagcatgacgctcagatcgtccacatcgccatggaggcgggcctacga
atttcacctgagcagtggtcttctctgctgtatggagacctggtccacaagtcacatatg
cagtctattattgacaagttgcagtctccagagtcatttgcaaagagcgttcaggagctg
acgatcgttttgcagaggacgggagacccggccaacctcaccagccttagaccacaccta
gagctactagccaacatagaccacaacccagatgccccggcaccatcatgggaggagttg
gaaagtgtgatgctggctgtgaagatggtggttcatgggctagtggaattcatacagaac
tttagcaagaagagccacgatgctccccagcctcaggccaacagcaagtacaagaccagc
atgtgccgagaccttcgtcagcagggaggctgtcccagaggaaccaactgtacatttgca
cacacacaggatgagctggagaaatttagactgagaaacaagaagagcagcggcgtaggc
tgtgccttcccattagcacctggggttatgggtaaaaccttcaccatggagggcagcatc
cactcagatgtgtccgcaggcatggggcaggggctcaatggcacaggggagaacaccgac
tccctgacagagggaatgcccggcctgactcacccccaactgatctccagaggagctgac
atgatggaggaaatgaatagaacggtgccaaatgaatccaatgatgctaaaggttccaac
gggttaaccaccagaaactcatcagggtccactgaacagaagtccatctcacctcccagg
actccagtcagccactcttcagcatcgtctcccttgacaacggttgggcgggttgatgct
ggaactcttatgcccaaacatggtcagttcatgctgcgtgcaccacatccttctcaggcg
tcggagctgtactatcaggagccccactctgcatacgagtcacctcattatcaaccaaac
tcaggttcctactaccaatcatctctccatcctcctcacaaaccctgcatggctcgcttt
cttcgatccaccaacgtcccagaatcctctctgccaccctcgattggccctccatcatct
tcctaccccagtgaccctcaagcacaacacccaccttcctcctcttcatcggggtaccca
ccacacctgcctagagatcggatgggacctactgccttccatcaccacccggggcagcct
cagtatggccctctggctccagctcatggtgtttatgctcccctctatgacagcaggaga
gtatggaggcctcagctgtaccacagagaggatgcccggagtaattctctgcctccagag
gtgctgcattcctctgtctaccagcctccactcagggagagattcaactctctggacagc
aactactgctccggagctgaacaccgcacagggctacacagggattatggccgtgtacct
ctcggctacgaggatctgttcagaaggaagcaggaacagtgggctcatcatcaccaccat
cacaacgccaaccggccctcccagtcctcccccatcttcaccattgattttggaagtgag
cgtgtggagggcagtggaggccagtgtgtggggtgcaggttcagaggcgaggaaagttta
gcgcactactctccgtggtcctgtggtaccatcggcccctgcctcggctcctttgagcct
gaaacactcacacacacctcggctcactcctgctcagagcactcggagtcggacagcaat
gcagccggaggtggtggcggaggtggaggcggtggtagcagcggtggtgtcgggaagcga
tggctgcaatccttggatcactaccggcgcttgaaagacgaggacccgatcattcccttt
agtgaggggcccattatctccaagtggggtgccatatccagggcatctcgcacaggctac
cacactaccgatcctatccaagccacagcctgccagggcagtgccaacaccacacccatc
aacttcaaagattacaaccaccacttagatcacagtgactacaggtggagctccagagga
tcagactcttccagccactccagtttcctagagagtgagcagctttgtgcgtcagaactt
cactgctgtcgaacctcaataagcagcggagagaaaatcgtgtctgatctgcaagtctgt
cagaccgcctacagccgggatcggggccagggcgagagcgaaccggacccagatcgagac
atcgagctcgaactgtgcgctcttgacttggaggattcagaccaccaggacagtcaagtc
tccggttggtataatgatgagtctttagacctggtcaccccacagtctcaggatgcttcc
catctccggccaccaccctgctcctctcccctcctctcttctcctgtggaggagcagccc
caaacagagggtttttcgacagaaaagatagattctcacctgcttaaaaagatggccttc
aggaagtctctgtctcctggagggttagtctcaggaggtctgggcgttggcaagcttgtg
ctgcggactggacctcctcgcctgggggacacttccacccgggcttgtcctaaaatgccc
ggaacagagatgctactcaatggaagctaa
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