Etheostoma spectabile (orangethroat darter): 116704038
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Entry
116704038 CDS
T08457
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116704038 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116704038 (nup54)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116704038 (nup54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
116704038
NCBI-ProteinID:
XP_032395112
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Position
16:15431585..15444414
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AA seq
620 aa
AA seq
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MAFSFGGATSNPAASTSGFSFGSFGAKTTASTAAFGFGPAATTTASSGFGTLTAPGFGAA
TTTTAAAPATGFSFGSTNTGFGGLGAGNTTAGGFSFGGIGLNANPAAVSFNVGCFGTATT
TGTVFNFGNSLASTGTFGGFGTNTTTATAPGSTFSFATPSNATGSLFGNTQNKGFGFSSG
LGAGTTAGTTGFGTGLGTTGLGGFGGFNIQPTQQQPGSLFGQQQAQPSQLYQQVTALSAP
TLLGDERDSILAKWNQLQAYWGTGKGYYSNNNQPVDFTQENPFCRFKAVGYSCVPVSKDE
DGFVVLLLNKKEADVRAQQQQLVECLHKVLGSNQTLTVNVDCVKALPNDQTEVIIYVVER
SLNGTSKRIPATTLFSYLEQANIKIQLTQIGVAMSVTRTELSPAQLKQLLQNAPAGVDPI
IWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISSDISELQKNQAT
TVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVHLDTIQSELNAPTQF
KGRLNELMSQIRMQNHFGAVRSEERYSVDADLLREIKQHLKQQQDGLSHLISVIKDDLED
IKLIEHGLIDSGHKRGGMLS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggcgccacgagcaacccagcggcaagcacgtccgggttttca
ttcggttcatttggtgccaaaaccacagcatcaaccgcagcatttggctttggaccagca
gccactaccaccgcctcatccggattcggcactcttaccgcccctggttttggggcagcc
accaccaccactgctgctgcaccagccacaggatttagttttggctccaccaacactgga
tttggggggctgggagctggaaacaccacggctggtgggtttagttttggggggattggt
ttaaatgccaacccagcagcagtcagctttaatgtggggtgctttggtacagcaaccacc
actggcactgttttcaattttggtaatagcctggctagcacaggcacgtttggtggattt
ggaacaaatacaacaactgccactgcaccagggtccacctttagctttgctactccctct
aacgccacaggaagcctgtttggtaacacacagaacaaaggctttgggttctcctctggg
cttggcgctgggaccactgctgggacaacaggatttggaactggattaggaacaactggc
ctgggtgggtttggaggctttaatatccagcccactcagcagcaaccaggaagcttgttt
ggccagcaacaggctcagcccagccagctttaccagcaggtcactgctttgtcagctccc
accttgttaggagatgagcgtgactccatcttagccaaatggaaccaattgcaggcttac
tggggcactgggaagggttactacagcaacaacaaccaaccggttgacttcacccaagag
aacccattttgcaggttcaaggcggtgggctatagctgcgtcccagtgagtaaggatgaa
gatggtttcgtggtcttgcttctcaataaaaaggaagctgatgtgcgagctcagcagcag
cagctggtggagtgcctccacaaagtcctgggaagcaaccagacactcacggtcaatgta
gactgtgtcaaagccttgcctaatgaccagacagaggtgatcatttacgtggtggagcgt
tctctcaatggcacctctaagcggatccctgccaccacactcttcagttatctagagcag
gccaacatcaagatccagctcacacagattggagtggcaatgtctgtcacacgcacagag
ctgtctccagcacagctcaaacagctgctgcaaaatgcacctgcaggagtggaccctatc
atttgggagcaggccaaggtggacaaccctgacccagagaaattaataccagtgcccatg
gtgggttttaaggagctgcttcgcaggttgcagatccaggagcaaatgaccaaacagcac
cagaccagagtggatattatttccagtgatatcagtgaactgcagaagaaccaggcaacc
actgtggccaagattgcccagtacaagaggaagctgatggatctctcccacagggtgctg
caggtgctgataaaacaggagattcaaaggaaaagtggttatgcaatccaagtggatgag
gagcatctcagggtgcatctggacaccattcagtctgaactcaatgcccccacacagttc
aagggtcggttaaatgaattaatgtcccaaatccggatgcagaatcactttggagctgtg
agatcagaagaacgctacagtgttgatgcagacctcctcagggaaatcaaacaacacttg
aaacagcagcaggacggtttaagtcatttaatcagcgtcatcaaagatgacttggaagac
atcaaactcatagagcacgggctgattgacagtggacacaagagaggaggcatgctgagc
tga
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