Etheostoma spectabile (orangethroat darter): 116704135
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Entry
116704135 CDS
T08457
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
esp04131
]
116704135 (vldlr)
Membrane trafficking [BR:
esp04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
116704135 (vldlr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Motif
Other DBs
NCBI-GeneID:
116704135
NCBI-ProteinID:
XP_032395286
LinkDB
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Position
16:complement(21810175..21859651)
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AA seq
909 aa
AA seq
DB search
MCGLRVNRQNQSRSRPARASSKGRQAGRAEMQPASAQLATVRTLQEMVTSTPGILLLPML
ICLQHCIYVHGTKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSDENSCVRKTCVEVDF
VCRNGQCVPKRWHCDGEPDCEDGSDESVEICHMRTCRVNEFSCGAGSTQCIPIFWKCDGE
KDCDNGEDEVNCGNITCAPNEFTCASGRCISRNFVCNGEDDCGDGSDEVECAPSSCGPSE
FQCGNSSCIPASWVCDDDVDCHDQSDESPSRCGRHPTPPAKCSSSEMQCRSGECIHKKWR
CDGDPDCKDGSDEANCPVRSCVPDQFKCDEGSCILGNRQCNGIRDCADGSDEVNCKNMTQ
CNGPEKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLMNNGGCSHICKDMVIG
FECDCTPGLQLIDHKTCGDINECVNPGICSQICINLKGGYKCECHNGYQMDPTTGVCKAV
GKEPSLIFTNRRDIRRLGLERKEYTQIVEQQRNAVALDADYNQQMIFWADLGQRAIYSTL
LDKRGDVSIHSKVIDNVQTPVGIAVDWIYKNLYWSDLGTKTISVANFNGTKQKVLFNRGL
KEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVATDIQWPNGITLDLIKGRLY
WVDSKLHMLCSVDLNGDNRKKVLQSLDYLAHPFALTVFEDRVFWTDGENQAIFGANKFSG
SDVVTLASNLNDPQDIIVYHELIQLSGPNWCAEKGANGGCSYMCLPAPQINKHSPKYTCV
CPEGQELAADGLRCRPEHSTKGPSNDGKALILPPPESNVSTSIQVNSPARGSAAAWAILP
VLLLAMAAAGGYLMWRNWQLRNQKSMNFDNPVYLKTTEEDLNIDITRHGANVGHTYPAIS
IVSTDDDLS
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggtttgcgcgtgaaccggcagaatcaaagtagaagcaggccagcgcgagccagc
agtaaaggcaggcaggcaggcagggcagagatgcagcccgcgagcgctcagctagctacc
gtacgtacactgcaagagatggtcacgtccacaccggggatcctcctgctgcccatgcta
atatgtctccagcactgcatttacgtccacggtactaagacggaatgtgaggccagccag
tttcagtgtggaaacggccgctgcatcccgtccgtctggcagtgtgacggagacgaggac
tgcaccgacggcagtgacgagaactcctgtgttagaaagacttgtgtggaggtggacttc
gtttgtcgcaatggccaatgtgtcccgaagcgatggcactgtgatggggagcctgactgc
gaggatgggtccgacgaaagcgtagaaatctgccacatgaggacatgtcgtgtgaacgag
tttagctgcggcgcgggctccactcagtgtatccccatcttctggaaatgtgacggagag
aaggactgtgacaatggagaggacgaggtcaactgtggtaacatcacctgtgctccaaat
gagttcacgtgcgccagcggccgctgcatctcccggaactttgtgtgtaatggtgaggac
gactgtggcgacggctcggatgaggtggagtgtgcaccgtcgtcctgcggccccagtgag
ttccagtgtggaaactcatcgtgcatcccggccagctgggtgtgtgacgacgacgttgac
tgccacgaccagtcagatgagtctccgtctcgttgcggccgtcatccgacgccgcctgcc
aagtgttcatccagtgagatgcagtgtcgctccggagagtgtattcacaagaagtggagg
tgtgacggagacccagattgcaaggacggcagcgacgaagccaactgtcctgtacgctcg
tgtgttccggatcagttcaaatgtgatgagggaagctgtatcctgggcaacagacagtgt
aacggcatcagagactgcgccgatggatccgatgaggtcaactgcaaaaacatgactcag
tgtaatggaccagagaagttcaagtgtcgcagcggggagtgtatcgagatgagcaaagtg
tgcaacaaggcccgagactgtcccgactggagcgacgaacccatcaaggaatgcaatcta
aacgagtgtctcatgaacaatggcggctgctctcacatctgcaaagacatggtgatcggc
ttcgagtgtgactgcacgccaggacttcagctcatagaccacaagacctgtggagacatc
aatgagtgtgtgaaccccggcatctgcagtcagatctgcatcaacttgaagggtggatac
aagtgtgaatgccacaacggctaccagatggatccaaccaccggagtctgcaaggctgtt
ggtaaggagccttccctgatcttcactaatcgacgtgacatccgtcgcctgggtctggag
aggaaagagtacactcagattgtagagcagcagaggaatgccgtggctctggatgcagac
tataaccagcagatgatcttctgggctgacctgggccagagggccatttatagcactctg
ctggacaaacgaggggatgtcagcatccacagcaaagtgatagacaatgtccagactcct
gtgggaatcgccgtggactggatctataagaacttgtactggtctgatcttggcaccaaa
accatttctgtagccaacttcaacggaaccaagcagaaagttctgttcaacagaggcctc
aaagaaccggcatccatcgctgtagatccgctgtcggggttcctgtactggtctgactgg
ggcgagccagccaagattgagaaatcgggtatgaatggagtggacagacaggttctggtg
gcgacagacatccagtggcctaacggaatcaccctggatctgatcaaaggccggttgtac
tgggttgactctaagctgcacatgctctgtagtgttgacctgaatggagacaacaggaaa
aaagtactccagtctctggactacctggctcatccctttgctctcacagtttttgaggat
cgagtcttctggacagatggcgaaaatcaagccatctttggtgcaaacaagttctcaggc
tcggacgtggtgacgctggccagcaacctgaatgacccccaagacattatagtgtaccat
gagctgatccagctgtcaggtcctaactggtgtgcagagaaaggtgccaacggaggttgt
agctacatgtgtctgcccgcgccgcaaatcaacaaacactcccccaaatacacctgcgtg
tgtccagagggacaggagctggctgctgacggcttacgctgcagacctgaacattctacc
aaaggtccctcaaatgatggaaaagctttgatactgccacccccagaatccaatgtgagc
acatccatccaggtgaactccccagccagagggtctgctgctgcctgggccatacttcct
gtcttgctgctggcgatggcggcggctggcggctacctgatgtggagaaactggcagctg
aggaaccagaagagcatgaactttgacaaccccgtctacctgaagaccacagaagaagac
ctcaacattgatatcacccggcacggtgccaacgtgggtcacacctaccctgcgatttcg
atagtgagcacagatgacgatttatcatga
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