Etheostoma spectabile (orangethroat darter): 116704344
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Entry
116704344 CDS
T08457
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
esp03009
]
116704344 (ddx54)
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116704344 (ddx54)
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
Pre-60S particles
Helicases
116704344 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
116704344
NCBI-ProteinID:
XP_032395632
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All DBs
Position
16:complement(18810282..18821520)
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AA seq
871 aa
AA seq
DB search
MAQRRKKLTKKKRYTANADNVDFELAAEVNDNDSPGRKLPRFPTTSDCLSDVEPDTRQLV
RAQNKKKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTVPVILDGKDIVAMARTGSG
KTAAFLVPMFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKYTGLKTALILGGDR
MDDQFAALHENPDIIIGTPGRLMHVVSEMNLKLQNVEYVVFDEADRLFEMGFAEQLQEII
RRLPDTRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHVRMDEKQA
LLLYLLRNVVKPQEQTVVFVATKHHVEYIKELLTSEGVECAYIYSALDQTARKINIGKFV
HRKAMVLIVTDVAARGIDIPMLDNVINYNFPSKPKLFLHRVGRVGRAGRSGIAYSMICPD
EMPFVYDLHLFLGRPVQFATHEHTQDSEGVFGRVPQSILDDESSHLTTIHENSLDLQNMH
HVSENAYKQYLKSRPNPSPESFRRVKNTDLSSMSVHPLLVSGLEKTELERLQIVDAIKGY
KSKSTIFEINSNSKTQAGEVMRTKRSKDTRLVDKYSKRRDSLAAESQLHQPVKPSTSADD
DFTRTTGEEEDDIKGVFSVVVGGKRRSLQEDGEEGQKNKRSRQSGKDEDFYIPYRPKDFN
SERGLSLGGEGTVFDQQASSAVLDLMGDDGAKLNQHKSIMKWDRKRKRFVREAGKEDQKK
KIRTDGGQVINNKKNRKNFYEEWKKKYKVDDGGSGSDGEGGGRGRGGGGRGRGRGKGGSR
PGGGRGRGRGGNPNFQSPVGPQQTPGGRRVRSELKTPEQILKQRKKHQKHQFLQSGGLKN
LRNKNKQWVGEVNKSGFGRGGQKKGKMRKRL
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagaaggaagaaactgacgaagaagaagagatacacagctaatgctgacaac
gtagactttgaactggctgccgaagtcaacgacaatgattctccagggaggaaactcccg
cggttcccgaccacatcagactgcctgtcagatgtggagcctgacaccaggcagctggtc
agagcccagaacaagaagaaaaagaagtctggaggctttcagtctatgggtctcagttac
cctgtatataaaggcatcatgaaaaagggttacaaagtccctactccaatccaaagaaag
actgtcccagtgattctggatggtaaggatatagtggccatggctaggactggcagtggt
aaaacagctgccttcctggtgcccatgttcgagaagctgaaggcccctcaagcccaaaca
ggagccagggccctcatcctgacccctaccagagagttggcactgcagaccatgaaattc
acaaaagagttggggaaatacaccggcctaaagactgccttgatccttggtggagacaga
atggatgatcagtttgctgctcttcatgagaaccccgacataatcatcggtacccctggt
cgtctcatgcacgttgtcagtgagatgaatctgaagctgcagaatgtggagtatgtggtg
tttgatgaggccgacaggttgtttgaaatgggttttgctgaacagcttcaggagatcatc
cggaggcttccagacaccaggcagactctgctgttctctgccactctgcccaaactgctg
gtggagtttgccagagctgggttgactgaaccagtgttgattcgtttagatgtggattcc
aagctcagtgaccagattaagctgtcatttttccatgtgcgtatggatgaaaagcaggca
ctgctgctctacctgctgaggaatgtagtgaagcctcaggagcagacagtggtttttgta
gccaccaaacaccatgtagagtacatcaaggagctgctgacttcagaaggtgtggagtgt
gcctatatctacagcgccctcgatcagactgccaggaagatcaacatagggaaatttgtg
catcggaaagccatggtgctaattgtgacagatgttgctgctcgtggtatagacatcccc
atgctggacaatgtcattaactacaacttcccctccaagcccaagctcttcttgcacaga
gttggccgtgtgggacgtgctggacgcagtggcatagcctacagtatgatttgtccagat
gagatgccttttgtctacgaccttcacctcttccttggaaggcctgttcagttcgccaca
catgaacacacacaagattcagagggcgtgtttggtcgggtccctcagagtatactggat
gatgaaagttctcatctgacgacaattcacgagaactccctggacctgcaaaacatgcac
catgtctccgagaacgcctacaagcagtatcttaagtctcgaccaaacccctcacctgag
tccttcagacgggtcaaaaacacagatctgtccagcatgtctgtccatccattactagta
tctggtttggagaaaacggaactggagcgccttcaaatagttgatgccatcaaaggctac
aaatccaaatcgactatctttgaaatcaactctaacagtaagacgcaggctggtgaggtg
atgcggaccaaacgctctaaggacacgcgactggtggacaaatacagcaaacggagagac
agcctggcagcagaaagccagctgcaccagcccgtcaagccctccaccagcgccgacgat
gatttcacacgcaccacgggcgaagaagaggatgacattaagggggtgttctctgtggtg
gtaggtggcaaaaggagaagcctgcaggaagatggggaagaaggacaaaagaacaagaga
agcagacagtcgggcaaagatgaggacttttacatcccatacagacccaaagactttaac
tctgagagagggttaagtctcggcggagagggcactgtctttgaccagcaggcctcctcg
gccgtcctggacctcatgggagatgatggagccaagttaaaccagcacaagagcataatg
aaatgggaccgtaagaggaagcgctttgtaagagaagcaggaaaggaggaccagaagaag
aagatcagaacagatggtggacaggtcatcaacaacaagaagaacaggaagaacttttac
gaggagtggaagaagaaatacaaggttgatgacggaggatctggctcagatggtgaagga
ggaggaagaggaagaggaggaggagggagagggagagggagaggaaaaggagggagcagg
ccaggaggaggccgtggccggggtcgtggcggtaatcctaactttcagagtcctgtagga
ccgcagcagacacccggtggccgcagagtgcgctcagagctgaagacgcccgagcagatc
ctgaagcagcgcaagaaacaccagaagcatcagtttctgcagagtggaggcctgaagaat
ctccgtaacaagaacaaacagtgggtcggagaagtcaataagtcaggttttggacggggt
ggtcaaaagaaaggtaagatgaggaagagactctga
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