Etheostoma spectabile (orangethroat darter): 116704473
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Entry
116704473 CDS
T08457
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116704473 (taf1c)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
116704473 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
116704473
NCBI-ProteinID:
XP_032395892
LinkDB
All DBs
Position
16:complement(20155928..20187222)
Genome browser
AA seq
1099 aa
AA seq
DB search
MDYQFPQQLFPSFYNCAPPDSVLKHCAGNWGCYDRVRPQGTSGPLSSWTFTSKHQVRGET
WHHTEPVPIPLLSPKKSFLWPSTPPEPLDFTKHMENFFMDHRLDAFGCMSEILSENFNFK
QGQRERYRRDSVHMWKVKNFLDMMKYKICAQSYSSRALDMYSALLSDVVPSIPPELLGSL
LYEELTEQRDCMLFSEGATGGALAFVPYSQSGSDSQRGCLLYPGNRGLDCLNFHRVELQH
HKGSSSCVDSSNSDPFTFQLKGPIRQISSTSLLNDCCVAVRSDYLCGVWRFSERNEPRLL
QVVNTKEVATCINVSPHVLGEVLVASESGAANLWTVGRGMQKIREEDSNLYFNAKSSWRW
CEFSAHPRVMLYADRTGVELTDIRVSPVSNHTLFRISNTPECRSGERLILSRYLGDVHPF
QHLITTQFSAYIMDERFPCMPMLKWDHMMQSPPMFCHAVRGSTSSGSEVGGAKTTKVLLG
SHSSQEITLLQYSGGRAEACSTHGPPRALLRPRDSLKHLPIQIPHRLDIATSRLSSPAAG
LTCIQKRGRSEAGGEECICILQLTEAGDIFYQILEPEQPDTCRPPAADEDLLPQPTLKEA
TTSGREPDKQLLPHSQMVISDTSSDEGVIGPTQGPTVQRFVAETPEKEQRVLNSYFSSED
SDSGGKGQYLKQLGLQVLVNNDPELDQVCGLEVGVKDGTVGKNTADNTVEPSSLGHIGPS
DCHVPVKLSDSALVTWKHWLQKLMRKSRDKKPRPRCLQHFTVKTGGLLHPSEDERGEAQR
YSTKAKPVQNLRRDLRACMSKRSLLVHSAVSASLEAPDVVMVPDQVDIEVWRDQISQRLT
LSWQGEEAWRAWWEDQLGLNREKKVEALKKKRRREKEAKRATGRRLELSGSFTSSISYQS
ELGDFSDSTGWSSATSQGAWSDTESKVSQSEGSLECRVPRASPPSTVQTDTPDYTLTTTP
QSVKGKQSDQQTPSSSHILPLSQTPKPDSTLANQRSNKRPAEDYLSSLFAPQDEPSQHGS
YFLEERSPVHHPPRPMALSSSQLRGSQSGPQRSLRMDLSQDTTVWSGFSQSQFLSQSSQG
RMGLSQASQPKKKKSRMGF
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggattaccagttcccacagcagcttttcccttcgttttacaactgcgcaccgccggac
tcggtcctgaaacactgcgctggaaactggggctgctacgacagagtcagacctcagggc
acctccggtcctctctccagctggaccttcacatccaagcatcaggttagaggggagaca
tggcatcacactgagccggtaccaattcccctcctgtcccctaaaaagtctttcctttgg
ccttctacgcccccagagccgctggacttcacaaaacatatggagaacttcttcatggac
caccgcctggatgcctttgggtgcatgagtgaaattttgagtgaaaattttaactttaaa
caaggccagagagagagatatcgcagggattcagtccacatgtggaaggtgaaaaacttc
cttgacatgatgaagtataaaatatgcgcgcagtcctattcctccagggcgctggacatg
tacagcgccctgctgtcagacgttgtgccttccatccctcctgagctgttgggttctctg
ctgtatgaggagctgacggagcagagagactgcatgctgttctctgaaggagccacaggg
ggcgctctggcttttgtcccctattcacagagcggcagcgactctcagcgcggctgtctc
ctctaccctggaaaccggggactggactgcctcaacttccacagagtggagctgcagcac
cacaaaggaagttcctcctgtgtggacagcagcaacagtgacccattcaccttccagcta
aaaggccctatcagacagatcagctccacctccctgttaaacgactgttgtgttgcagtg
cgttcggattacctgtgtggagtttggcggttcagtgaaagaaatgaacctcgtctgctg
caagttgtcaacaccaaagaggttgcaacttgcatcaacgtcagtcctcatgttttaggt
gaagttctagtggcaagtgaaagcggagcagcaaacctgtggactgttggcagagggatg
cagaagattcgggaagaagacagcaacctgtacttcaacgctaagtcgtcatggcgatgg
tgcgagttttctgcccacccaagagtgatgctgtacgcggataggacgggggtggagctc
acagacattagggtgagtcctgtctcgaatcacactctgtttcgcatcagcaacacccca
gagtgtcgcagtggggagagacttattctgtcaagatatctgggagacgtccatcccttc
cagcacctcatcacaactcagttctcagcctacatcatggatgagcgtttcccctgcatg
cccatgctcaagtgggatcacatgatgcagtccccaccgatgttttgtcatgctgtccgt
ggctccacttcctctggctcagaggtgggtggggctaagaccaccaaggtcctgctgggg
tcccacagctctcaggaaatcacactgctgcagtactcgggaggcagagcggaggcctgt
tccactcacggtcctcctcgggcactgctcagacccagagacagtctgaaacaccttcct
atccagatccctcatcgcctggacatcgctaccagcagattgtcctcacctgctgcaggt
ttgacctgtattcagaagagaggcagaagtgaggccggtggtgaggagtgtatctgtatc
ctacagctgacggaggcgggagatattttctatcagatcctggagcctgagcagcctgac
acctgtcgacctccagcagcagatgaggatctgctgccacaacctactctaaaagaagcc
acaacttcagggagagaaccagacaaacagcttctaccacattctcagatggttatatca
gacacatcgagcgatgagggtgtaatcggaccaactcagggtccaactgtgcagaggttt
gtggctgaaacaccagagaaggaacaacgagtgctgaactcttacttttcctctgaggac
tcagactctggagggaaaggtcaatacctaaagcagcttgggctgcaggtcctcgtcaac
aatgatccagagctggatcaagtgtgtggattggaagtaggtgtgaaagatggaacggtg
ggtaaaaatacggctgataatactgtggaacccagcagtttgggtcacattggtccctct
gattgccatgttccagtaaagctcagtgacagtgctcttgtcacgtggaaacactggctc
caaaaactgatgcgtaagagtcgtgataaaaagccccgtccacgctgcctacagcacttc
acagtcaaaactggaggcctcctccacccatctgaagacgagagaggtgaggcacagaga
tattcaacaaaagcgaagcctgtacagaacctgaggcgtgatctgagggcgtgcatgtcc
aaacgctcgctgctggttcacagtgctgtctctgcctcccttgaggctccagatgtggtt
atggtgccagaccaggtggatatagaagtctggagagatcaaatcagccaacgtctgacc
ctctcctggcagggggaggaggcatggcgggcttggtgggaagatcagctggggctgaac
agggagaagaaggtggaggctctgaagaagaaaaggaggagagagaaggaagcaaaaaga
gctaccggccgacgcctggagttgtctgggagcttcacttcgtccatcagctaccagtca
gaactgggcgatttttctgattcaacgggctggtcctctgcaacgagccagggggcgtgg
tcagacactgaaagtaaggtgtcccagtcggagggctctttggagtgccgggtgccaagg
gcctcaccaccctccaccgtgcagactgacacgccagattacacactgaccaccacacct
caaagtgttaaaggtaaacaatctgaccagcagactcccagcagctcccacatccttccc
ctgtctcagactccaaaacctgactccacactggccaatcagaggagcaacaaacgtcct
gctgaggactacctcagttctctgtttgcaccacaggatgagccctcgcagcatggcagt
tatttcctggaagagaggagccccgtgcaccacccacctcgacccatggccttgtcctcc
tctcagcttcgtggctcccagtctggccctcagagaagcctcagaatggatctgtcccag
gacaccaccgtctggtcgggtttctcccagtctcagttcctctcccagagttcacagggt
cggatggggctgtcgcaggcgtcacagcccaagaagaagaagtctcgaatgggattttga
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integrated database retrieval system
