Etheostoma spectabile (orangethroat darter): 116704584
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Entry
116704584 CDS
T08457
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116704584 (chd1)
03036 Chromosome and associated proteins [BR:
esp03036
]
116704584 (chd1)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116704584 (chd1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
116704584 (chd1)
SLIK complex
116704584 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CHD1-like_C
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
116704584
NCBI-ProteinID:
XP_032396061
LinkDB
All DBs
Position
16:complement(25366104..25399101)
Genome browser
AA seq
1787 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASGSASGSSSSSSSSSSQSGSSDSGSGSDS
GSASDSDTEKSKQKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQQQQQQQKRQSS
SNSGSDEDSSSSDGSDSSSGSKKRRNSGSSDSGSGSGSGSGSGSDSSAEDNSDETASDYE
PSHKIKSRKPPTKMNFRNGKKSSNQKKKSQKCSSSDDEDENYKKAASAGPRRQATVNVSY
KEDEELKTDSDDLVEVLGEDVPQPEEDEFETLERVMDCRIGRKRATGSITTVYAVEADGD
PNANFNPNKEAGDIQYLIKWKNWAHIHNTWETEETLKLQNVRGMKKLDNFKKKESDKKRW
LKAASPEDIEYFNCQQEMMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECS
WEDGALIGKKFQKCIDDYMCRNQSKTIPSRDCKVLKQRPRFVPMKKQPTYIGGDGLELRD
YQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQLWAPLMNVVVYLGDISSRNMIRTHEWMHVHSKRLKLNIILTTYEILLKDKSFL
GSVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFHSWELFEEAHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQK
QYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFFSRAEALQHL
VRCSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKGRQFLFQRLDGSIKGEMR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KRQVNIYRLVTKSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSAPFNKE
ELSSILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVAN
FSMMDEEEIDIDSERSLRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQISFN
AGQGRQSRNRRYSGSESDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGG
PLERLDAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSSLL
IGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEA
QKQAGTANSRKRKPRSKKSKTLKPSKTEEVLKSTSSDPPSDKRTDDEDDIEEEKEAAAPV
KTASRRGRADRTVLKEEDEDEEPEQEDVSSSGEGEGEVKEKEIKKEKEESWDIKETKETK
EKKETKPVEAVHKQDESMEKNEVKPEVRTKKVSDVPVHITASGENVPLSEESEELDQRTF
SVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQW
RKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSTTTHSYKHADIERLKDN
SHQDDSSRDSYSSDRRYHESSGSRERHSSESHRKTTGGESRKRPYSSFSNGKDHRDRDHY
RPDSRDRDRDRQDRYYNDGKHRKLEEFRSSRDHRLDMKEHSHSDHRSSYRYHSDWQAEQR
ASASGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgaagcgaggatgaaagtgtaagcaacagtagtggagaatcaagtaattct
gatgatgaatccggttctggatccggctctgcatcagggtccgcctcaggctccagttcc
agctcctcgagcagcagcagccaatcagggagcagcgactcaggtagtggctcagactct
ggcagcgcatcagactctgacacagagaagtccaagcagaagatggaaccgccaaacaag
tcaaacatagacggagccgagttctggaagtccaacccaagtatccttgcagtgcaaaga
tctgctatgctcaggaaacagcagcagcaacagcagcagcagcaaaagagacaaagctcc
tcaaatagtggatcggatgaggactcgtcaagtagcgacggatccgactcatcaagtgga
tccaaaaagagaagaaattcaggctcttctgactctgggtcaggttctggatctgggagt
ggttctggatcagactcatcagcagaggacaacagtgacgaaacggcatcagactacgag
cctagtcacaaaatcaaaagcagaaagcctccaaccaagatgaattttcggaatggaaag
aaaagcagcaaccagaagaagaaatcccagaagtgttcctcttctgacgatgaggatgag
aactacaagaaagcggcgtctgcggggccacggcggcaggctaccgtcaacgtcagctac
aaggaggacgaggagctgaagacggattcagacgacctggtggaggtcctgggcgaagat
gtcccgcagcctgaagaagatgagtttgaaacacttgagagagtgatggactgcaggata
ggaaggaaaagagcaacaggaagtataaccactgtatacgctgtagaagcagacggggac
cccaatgccaacttcaatcccaacaaagaggctggtgatatccagtatctgataaagtgg
aagaactgggcccatatccataacacttgggagacagaggaaacacttaagttacagaac
gtcaggggcatgaagaaactggacaatttcaagaagaaggaatcggataaaaagagatgg
ttaaaggcggcctcaccagaggatatagagtatttcaactgtcagcaagaaatgatggac
gacctgcactctcagtaccagcttgtagagcgaatcataggacattcgaatcagaagtca
gcggctggttacccagactacctgtgcaagtggcagggtttgccatactcagagtgtagc
tgggaagatggtgctctgatcggcaaaaagttccagaaatgcatcgacgactacatgtgc
agaaaccagtccaagaccattccatccagagactgcaaggtgctcaaacagagacccagg
tttgtgcctatgaagaagcagccaacgtacataggaggtgatggactggagctccgagac
taccagttggacagtttgaactggatggcccactcctggtgcaaaggcaacagttgcatc
ctcgctgatgagatgggtttagggaagaccatccagacaattagcttcctcaactacctg
tttcatgagcaccaactgtatggaccctttttgctggttgtgcccctctctacactaacc
tcctggcagagagaaatccagctctgggcccctctgatgaatgttgtggtctacctggga
gacatcagcagcaggaacatgatcaggacacatgagtggatgcatgtccacagcaagaga
ctgaaacttaacatcatcctcacaacatatgagattctcctcaaagacaagtcattttta
ggcagtgttaactgggccttcatcggtgtggatgaggcgcaccgactgaagaatgatgac
tccctcctctacaagaccatgatggacttcaagtccaatcacaggcttctgatcacagga
acgccactgcagaactccctgaaagagctctggtccttgctgcacttcatcatgcccgag
aagtttcactcttgggagctgtttgaggaggcgcatggtaaaggcagggactcaggctac
accagtctgcacaaagagctggaaccttttttactgcgccgagtcaagaaggatgtggag
aaatctcttcctgccaaagtagagcagatcctcagagtggagatgagtgctatccagaaa
cagtattacaaatggatcctgaccaggaactacaaggctctgagcaaaggtaccaaaggc
agcacgtcgggattcctgaacatcatgatggagctgaagaagtgttgtaaccactgttac
cttatcaagcccccagaggacaacgagttcttcagcagagctgaagccttgcagcatctg
gtccgctgcagtgggaagctggttcttttggacaaactactggtgcgtttaaaggagcga
ggacacagagttctcatcttctcccagatggtacggatgctggacatcctggctgattac
ctgaagggccgccagttcctctttcagagattagatggctccatcaaaggggagatgagg
aagcaggcgttggatcattttaatgccgagggctcagaggatttctgcttcttgttatcg
acgcgtgcgggcgggctcggtatcaatctggcatcagctgacacagttgtcatctttgac
tcggactggaacccccagaatgatctccaggcccaggccagagcccacaggatcggtcag
aaaagacaggtgaatatctaccgtctggtgacaaagagctcagtggaggaggaaatcatt
gagagggccaaaaagaaaatggtgctggaccaccttgtcattcagaggatggacactaca
gggaaaactgtcctccatacgggttctgctccctccagttcagcaccattcaacaaggag
gagctatcgtccatcctcaagtttggtgccgaggagctttttaaagagccagagggtgag
gagcaggagcctcaggaaatggacattgatgagatcctcaaaagagctgagaccagggag
aatgaccctggaccctccacagtgggagaagaactgctgtctcagttcaaggtagccaac
ttttctatgatggatgaggaggaaatagacattgactcggagcgtagtctgcggagttgg
gatgacatcattcccgaggagcagaggaggaggatggaggaagaggagaggcagaaggag
ctagaagaaatctacttgctgccacgcatgaggaattgtgccaaacagatcagctttaac
gccggtcagggcaggcagagcaggaacaggaggtactctgggtctgagagcgactcccca
tcagaccggaagaggccaaagaaacgaggacggcctcggaccattccacgagaaaatatc
aagggtttcagcgatgctgagatccggaggtttgtcaagagttacaaaaaatttggagga
ccactggaaaggttggatgctattgcgcgtgatgccgaacttgtggataagtctgaacat
gacctgaaacgcctggcagagacggttcacaacggctgtgtgagaacactacgagaaaac
ccctgcggaccagagaaaacgtcaggaggcagaagaggaaaggtgaagggccctacgttc
aggatctctggagttcaggtgaatgccaagctggttatctcccatgaagaagagctggct
ccactccacaaggccattcctgctgaccccgaggaaagaaagaagtatatgattccatgc
cactcgaaggcagcacactttgacattgagtgggggaaggaggacgactccagcctcctt
ataggaatctatgagtatggttacggcagctgggagatgatcaagatggatccggacctc
aacctcacacacaagctcctaccggacgacccggacaagaagccgcaagccaaacagctc
cagacccgagcagactacctcatcaagttgctaagcaaggacctggccaaaaaagaagcc
cagaaacaagcagggacagccaactcacgaaagaggaaaccaagaagtaaaaagagcaaa
actctgaagccatcgaagaccgaagaggtgctgaagagcacatcctccgatcccccatcg
gacaagaggacagacgatgaagacgacattgaagaggaaaaggaggcggcggcaccggtg
aagacagcgagcagacggggccgagcagacaggacggtgctaaaggaggaggacgaagac
gaggagcctgagcaggaggacgtttcttcatcaggggagggggagggggaggttaaagag
aaagagatcaaaaaagagaaggaggaaagttgggacatcaaagagacgaaggagacaaaa
gagaaaaaagaaaccaagcctgtggaggcagtacataaacaggacgagagcatggaaaag
aatgaagtaaagcctgaggtgcgaacaaagaaagtctctgatgtgccagtacatattaca
gcgagtggagagaatgtgccattatcggaggagtctgaggagctggaccagaggaccttc
agtgtgtgtaaagagaggatgcggccggtgaaagcagccctgaagcagctggacaggccg
gagaaagggctgtcggagcgcgagcagctggaacacaccaggcagtgtctcataaagatc
ggagaccatatcaccgagtgtctcaaggagtattcaaaccctgaacagatcaaacagtgg
agaaaaaacttgtggatatttgtttccaaattcacggagtttgacgccaggaaactacat
aaactctataagcatgcaatcaagaaaagacaagagaacgcccaggcaatggagcagaac
acgagaagtacaaccacccacagctataagcacgcagatatcgaaaggctgaaggacaac
tctcaccaggacgacagcagcagggacagctacagctcggaccggcggtaccatgagagc
agcggcagcagggagagacacagctcggagtcccacaggaagaccacagggggggagtcc
cggaaacggccgtactcctccttcagcaacggcaaagaccacagagacagagaccactac
agaccagacagcagggacagggacagagacagacaggacagatactacaatgacggtaag
cacaggaagctggaagagttccgctccagcagagaccatcggctggacatgaaggagcac
tcccactcggaccaccgctcgtcctaccgctaccactcggactggcaggcggagcagcgg
gcctcagccagcgggccccgctcgccccgggaccagcgctcgccctacgactcgcgctcg
cccatgggacaccgctcgcctttcgactattcatcggaccacaagagcacaccggagcag
atctggagcagccgcaagacataa
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integrated database retrieval system
