Etheostoma spectabile (orangethroat darter): 116705291
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Entry
116705291 CDS
T08457
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
116705291 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
esp03036
]
116705291 (ercc6)
03400 DNA repair and recombination proteins [BR:
esp03400
]
116705291 (ercc6)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116705291 (ercc6)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
116705291 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Med21
Spt5-NGN
Motif
Other DBs
NCBI-GeneID:
116705291
NCBI-ProteinID:
XP_032397254
LinkDB
All DBs
Position
17:complement(13750592..13767334)
Genome browser
AA seq
1449 aa
AA seq
DB search
MPVTLDGSEDQVPSSLSSPASAALTLGGTDEDGATGRSAICSLPENSQGSEVATAYPANI
GPGEGNNGGKRSGALLQIDRQRIQAASASSGADELQGLGVAVYDQDVLEQGVLRQVDEAI
QEASQATAKAEAEKEYHSVLDDVRSITVSLKQINKIIEQLSPYAASSKDISRKIESVKRQ
KENKEKQLKKVKAKQKRLQAVLGGEDTKRVEAELLAEDDEEEEAGPSTLGSMLMPAQETE
WEELIRKGHMTPFGTRIPQKEEKKEPRKVMLVENSAFDLYLADQAKMATERKRVPLLKKK
RRSGLSPGEAKGRNNRIVTSSKDKKMRKRIRKLQITALKAHPKARPKTEPQLPKPKRKHH
TEGVETDSEGSEYLPSDEGIDPDQEEREAIEEGFGEHDKEEYELKPYKKKSEGKGRKKVK
KKEESDEEYCPESSDEEEDVKGKDKKKKDDGDVECYKQRLRKWKRQRLRDREAKRERGEV
LTDDSDEEFDEGFKVPGFLWKKLYKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVIC
FLAGLSYSKLRTRGSNYRYVGLGPTVIVCPATVMHQWVMEFHTWWPPFRVAVLHETGSFT
SNKEKLIPEIASCHGILITSYSAVRNMQDTLQRFDWHYVILDEGHKIRNPNAGVTTACKQ
FRTPHRFILSGSPMQNNLKELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQV
QTAFKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQSFLDSKE
VYQILNGDMQVFSGLIALRKICNHPDLFSGGPRILRGIPEDQLTKEEHFGFWKRSGKLIV
VESLLRLWFKQGHRVLLFTQSRQMLNILEVFVTENNYSYMKMDGTTPIASRQPLIARYNE
DKSIFIFLLTTKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLL
TAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLSDPDGGQGTETSAIFA
GTGSDVKAPKKPQRPRPSHMLNHGSHIQNQSSANQNEAGAGSRHIPALRDGNTPSSKNSP
GKPNGPTESQITNQNGQDVEPNLSANAQHTRKNNRDWDAAKPAVRNTKSSGSHQHRDIDS
VLASPQKHREKRKHCDSADSDKHKRRKHSKGSRFEGHRISHLVKKKTFNKAESEDNETEK
KLDDYVLAKLFKKSGIHSVMQHDSIMESSNPDYVLVEAEANRVAKDALKALKVSRQQCRL
SFNRPPPPPASCLRKRFGQKNNSLLVPPSVKSVPTPSKCKDAAIVKRSVSKKPGSGAHFS
GEGAESDSFSAPLSSSSLLAKMKARNYLSMPSSQREEAEEEEGGSGVPGTSSPPPPPTEH
DELLVDVRNFIAFQANVDGQASTQEVLEYFKPRLTEKQAPVFRELLRSICDFQRTSGQEG
IWRLKERFR
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgacgttagacggttcagaggaccaagtgccctcctctttatccagccctgcc
agtgctgcccttaccctgggagggacagacgaggatggggcgacagggcgctcagcaatc
tgctctttacctgaaaacagtcagggctccgaggttgctacagcctatcctgccaacatt
ggacctggggagggtaacaatggtggtaagaggtctggagccttgctgcagattgaccga
cagcgtattcaagcagcatctgccagttctggggcagatgaacttcagggccttggtgtt
gctgtgtatgaccaggacgtccttgagcaaggtgtccttcgtcaagtggacgaggcaatc
caggaggccagtcaggctactgctaaagctgaggctgagaaggaataccactctgtactt
gatgatgtcaggtccatcacagtatctctgaaacaaatcaacaagattatcgagcaactg
tctccttatgctgcctccagcaaagatatcagtaggaagattgaatctgtcaaacgacaa
aaagaaaataaggagaaacagctgaagaaagtcaaagccaaacagaagcgacttcaggcc
gttttgggaggagaggacaccaaaagggtggaagctgagcttttggcagaggatgatgaa
gaggaagaagctgggccgtccacactgggcagcatgctcatgcctgctcaagagaccgaa
tgggaggagcttatccggaagggtcacatgactccttttggaacacgaatccctcagaag
gaggaaaaaaaggagcctcgcaaagtgatgcttgtcgagaactcggcctttgacttatac
ttggcggaccaggccaagatggctactgagaggaagagagtccctcttctaaaaaagaag
aggaggtccggactcagccctggtgaggccaagggaagaaacaacagaattgttacctct
tccaaggacaaaaaaatgaggaagcgtatacgaaagctccagataacggctttgaaagcc
catcctaaggctcgacctaagactgagccacagctccctaaaccaaagaggaagcatcac
actgagggagtggaaacagacagtgaggggtcagaatacttgcccagtgatgaaggcata
gatcctgaccaagaggaaagagaagccattgaggagggctttggggagcatgataaagaa
gagtatgagttgaaaccgtacaagaaaaaaagtgaaggaaaagggaggaaaaaagtaaag
aaaaaagaggagagtgatgaagaatactgccctgagagttcagatgaagaggaggatgtg
aagggtaaagacaaaaaaaagaaagatgatggagatgtggagtgctacaaacagagatta
aggaaatggaagcgacaacgtcttcgagacagggaggcaaagagagaaaggggcgaagtg
ctaacagatgacagtgatgaggaatttgacgagggcttcaaagtacctggcttcttgtgg
aaaaaactttacaagtatcagcagaccggtgtgcggtggatgtgggaacttcactgtcag
caggcaggaggcatcctgggagacgagatgggattgggtaaaaccatccaggtgatctgc
tttctggctggactgagctacagcaaactgaggaccagaggatcaaactacaggtatgtt
ggtttgggtccgacggtcattgtgtgcccagctacagtcatgcaccagtgggtaatggag
tttcacacctggtggcctcctttcagagtggccgttctacatgaaactggctcgttcacg
agcaacaaggaaaagcttattccagagatagcatcatgtcatggtatcctgataacctca
tattcagctgtgaggaatatgcaagacaccttgcagcgctttgattggcactacgttatc
ctggatgagggccataagatcaggaatccaaatgccggagttaccactgcctgcaaacag
tttcgcactccccacaggtttatcctgtcaggttctcccatgcagaacaatttaaaggag
ttgtggtctctgtttgacttcatattccccggcaaattggggacattgcctgtcttcatg
gagcagttctctgtgccaatcacaatgggaggatacagcaatgcctcacctgtacaggtc
cagacggcatttaagtgtgcatgtgtgctgagggacaccataaatccttacctgctcaga
agaatgaaggcagacgttaaggccaacctctccttacctgacaaaaatgaacaggttctg
ttttgcagattaacagaggaccagcggcaggtgtatcagagcttcttagattccaaagaa
gtctaccagatacttaacggggatatgcaggtgttctcaggtttgatagcattacgtaag
atctgtaaccacccggaccttttctcgggcggcccccggatcttaaggggaatccctgaa
gaccagctaactaaggaggaacactttggcttttggaaacgctcaggcaagctgatagtg
gttgagtcactgctgcgactctggttcaagcagggccacagagtcctgctcttcacccag
tctcgacagatgttgaacatcttggaggtatttgtgacagaaaataactattcatacatg
aaaatggacggcactaccccgatagcttcccgacagcccctcatcgctcgctacaacgag
gacaaatccatttttatctttttgttgaccactaaagtcggaggtcttggagtcaatttg
actggagccaaccgagtcatcatctatgacccagactggaaccccagtaccgacacacag
gcacgggagcgagcatggaggattggtcagaagcagcaggtgaccgtctacagactgctg
accgcagggaccatcgaggagaaaatctaccataggcaaatcttcaaacaatttctgacc
aatcgcgttctgaaagaccccaaacaaagacgcttcttcaagtctaacgacatctatgag
ctctttactctgtctgaccccgatggaggtcagggaacagagaccagtgccatatttgca
ggtactggttctgatgtcaaggcacccaagaaacctcagaggccaaggccatcacacatg
ttaaaccatggcagtcatatacagaaccagtcctcagccaaccagaatgaagctggtgca
ggcagcagacacattcctgcactaagagatggaaacactccgtccagtaaaaactctccg
ggtaaaccaaatggcccaacagaaagtcaaattaccaaccaaaatggtcaggatgtagag
ccaaatctttcagcaaatgcacaacatacaagaaaaaataatagagactgggacgcagcc
aagccagcagttagaaacacaaagtcatccggctctcaccaacacagagacatagactct
gtcctggctagtccacagaaacacagggaaaagaggaagcactgcgactcagctgactca
gacaaacataagaggcgtaaacactccaagggttctcggtttgaaggccaccgcatctct
cacttagtgaagaaaaagacttttaacaaagcggagagtgaagacaatgagacagagaag
aaattagacgattacgtcttggcaaagctcttcaagaaatctggtatccacagtgtgatg
cagcatgacagcatcatggagtcctccaaccctgactatgttctcgtggaagcagaagct
aacagggtggccaaagatgccctgaaagcgcttaaggtttctcgccagcagtgccggctg
tccttcaacagaccccctcctccacctgcaagctgtctcaggaaacggtttggacaaaag
aataattctctcctggttccaccttctgttaaatctgtccccactccaagcaaatgcaag
gatgctgctattgtgaagaggtctgtgtcaaagaagcctggttcgggagctcatttcagt
ggggagggcgcagaaagtgactcattctccgccccactctcctcctcctccctgctggcc
aagatgaaagcccggaattacctcagcatgccctccagccaaagagaagaagcagaagaa
gaggagggtggctccggagttccaggaacaagctcccccccacctccgcccactgagcat
gacgagctgttggtggatgtgcgcaactttatagccttccaggcgaatgtggatggacag
gcgtccacccaggaagtgctggagtacttcaaaccaagattgaccgagaaacaggcgcct
gtcttcagagagctgctcaggagcatctgtgacttccagaggacttctggtcaggagggc
atatggagactgaaggagcgtttccgctga
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