Etheostoma spectabile (orangethroat darter): 116705916
Help
Entry
116705916 CDS
T08457
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116705916 (ddx1)
03016 Transfer RNA biogenesis [BR:
esp03016
]
116705916 (ddx1)
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116705916 (ddx1)
Spliceosome [BR:
esp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116705916 (ddx1)
Transfer RNA biogenesis [BR:
esp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116705916 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
116705916
NCBI-ProteinID:
XP_032398287
LinkDB
All DBs
Position
18:14727668..14736988
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELEWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKRGRASIKTGGAIFNNWQMNPYDRSAAFAIGPDGLCCQSREFKEWH
GCRSTKGVSKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTVGCYLDLDKGQISFSKNGNDLGVAFEIPQHVKNQPFFASCVLKNAELKF
NFGGEDFKNAPKSGFVALNQAPEGHTVKSSQSGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNNVKQCAKYVENPKLRELLVIGGVAAKDQLAALELGIDIVVGTPGRLDDLISTGKLS
LAQVRFLVLDECDGLLSAGYTDFINRVHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIVFCRTKIDCDNLEQYFIQQGGGPDSKGHQL
SCVCLHGDRKPNERKTNLERFKRKEVKLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDDFDGKVSYGQRRGLGGGNYKGHVDILAPTVQELANLER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggggttatgcctgaaatcgcgcaggctgtggaagagctc
gagtggctgctccctactgacatccaggcagagtctattcccctcattcttggtggagga
gatgtacttatggcagcagaaactggtagtggcaaaacaggagccttcagtatcccagtg
atccagatcgtgtatgagaccttgaaggatcagcaggagggaaagaggggcagagcttcc
atcaagaccggaggagctattttcaacaattggcagatgaatccttatgatcgcagcgca
gcctttgcaattggtccagatggactgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctccacaaaaggggttagcaaagggaagtactactatgaagtgacctgccat
gaccagggtctgtgtcgtgttggctggtccaccagtcaggcagccctggacttgggaact
gataagtatggttttggttttggtgggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcacgacactgtcggatgctacttggatctagacaag
ggccaaatatccttctctaaaaatggtaatgacctgggtgtggcttttgagatccctcaa
catgtgaagaatcagcccttctttgcctcctgtgtgctcaagaatgcagagttgaagttc
aactttggaggagaagactttaaaaatgcccctaagagtgggtttgttgccctgaaccag
gcgccagagggccacacagtcaaatcttctcagtcaggcagtgccaaagtgagtcaggtg
aaagcatcatccaacgcacccaaagccctgatcatcgagccttctaaagaattggccgaa
caaactctcaacaatgtcaagcaatgtgcaaaatatgttgaaaaccccaaactcagggag
ctgttggtgattggtggtgtggctgccaaagaccagctggctgctctggaactggggatc
gacattgtggtggggacacccggcagactggacgacctcatatccactgggaagctcagt
ctggcccaagtccgctttctcgtcctggatgagtgtgacggcctactgtccgcaggctat
acagactttatcaacagggtccacaaccaaatccctcaggtcacttctgacggcaagaga
ctgcaggtgattgtttgttcagccactctgcattcgtttgacgtaaagaagctgtctgag
cgtattatgcactttcccacttgggtggacctgaagggggaggactctgtccctgagact
gtccaccacgtggtagttcctgtcaatcctaagaccgatcgtctctgggagcgcctcggc
aagaaccacatccggactgatgaagtccatgccaaagataacaccagaccaggagccaat
tctgcagaaatgtggtcagaagccatcaaggtgctgaaaggcgagtacacagtgagggcc
atcaaagagcacaagatggaccaggccatagtcttctgtcgcaccaagattgactgtgac
aacttggaacagtacttcattcagcaaggaggaggtccagacagtaaaggccatcagctt
tcctgcgtctgtctccatggtgatcgtaagcccaatgagcgaaaaactaacttggagcga
tttaagagaaaagaagtaaagctgctggtctgcacagacgtggctgccagaggaatcgac
gtccacggagttccttatgtgattaacgtcaccctgccagatgagaagcagaactatgtt
catcgtatcggcagagttggcagagccgagagaatgggactcgccatctccttggttgcc
atggaaaaggaaaaggtgtggtaccatgtttgcccgaaccgaggcagaggctgctacaat
acccggctgaaggaggatggaggttgcaccatctggtataacgagaaagagctcctgtca
gatattgaggagcatctgaagtgcaccatcacccagtgtgagccagatatcaaagtacct
gtggatgattttgatggcaaggtcagctatggtcagcgcagaggattgggaggtggtaac
tacaagggtcatgtggatattctggccccgacagtccaggagctggctaacctcgagaga
gaagcccaatcttccttccttcacctgggatacatgccaaaccagcttttcagagccttc
taa
DBGET
integrated database retrieval system
