Etheostoma spectabile (orangethroat darter): 116706136
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Entry
116706136 CDS
T08457
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116706136 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116706136 (smarca5)
03036 Chromosome and associated proteins [BR:
esp03036
]
116706136 (smarca5)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
116706136 (smarca5)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
116706136 (smarca5)
RSF complex
116706136 (smarca5)
WICH complex
116706136 (smarca5)
B-WICH complex
116706136 (smarca5)
NORC complex
116706136 (smarca5)
BRF complex
116706136 (smarca5)
NuRF complex (fruit fly)
116706136 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
116706136
NCBI-ProteinID:
XP_032398690
LinkDB
All DBs
Position
2:complement(9592582..9600872)
Genome browser
AA seq
1033 aa
AA seq
DB search
MSELLSCVEQREEQTELEEAGGAEEKSDSSDAGKESSSDAGPDGQDASSSSSKKVSAPGY
EEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKNDEKQNLLSAGD
NRHRRTEQEEDEELLSESTKTTNVCTRFDDSPSYVKSGKMRDYQVRGLNWLISLYENGIN
GILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVCL
IGDREERNALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSKL
SEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTNNCLGDTKL
VERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAGK
MDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKMKDQGS
RVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQVSINAYNEPNSSKFIFMLSTR
AGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIVER
AEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAILER
GERKTMEMKEKLSSLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRERKA
NYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKV
PRNPEMPNSAQLQKEEQGKIDEAEALAEEELEEKENLLQQGFTIWNKRDFNQFIKANEKW
GRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKA
LDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNS
PQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKSGSAQKRKSEA
TPDGRGRRKKLKL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaactcctgagctgcgtggaacagcgggaagagcagactgaacttgaagaagcc
ggaggagcagaggagaagtcagattcttcagatgctggaaaagagtcatcttcagatgcc
gggccagatggacaagatgcctcctcctcgtcatccaagaaagtatctgctccgggctat
gaggagaaagtgcaaacagaccggaccaacagatttgagtacctgttgaagcaaacggag
ctgtttgctcatttcatccaaccagccgcacagaagacccccacctccccgctgaagatg
aagccagggcgtcctcgcatcaagaatgatgagaaacagaacctgctgtctgcaggagac
aaccgacatcgccgcacagagcaagaggaggatgaagagcttctaagcgagagcaccaag
acaacaaatgtctgcacacgctttgatgactctccctcctatgtcaagtcaggaaaaatg
agagactatcaggtccgtggtctgaactggctcatctctttgtatgagaatggcatcaac
ggcatcctcgctgacgaaatgggtttggggaagactctgcagactatttccctgctgggt
tatatgaagcactacagaaacatccctggtccccacatggtgctggtgcccaagtccacc
ctctacaactggatgaatgagttcaagagatgggtgccttcgctccgtgcagtctgcctg
attggagacagagaggagagaaatgccctgatcagagatgtgctgttgcctggggaatgg
gacgtgtgtgtcacatcctatgagatgctcatcattgaaaaggcagtgttcaagaagttc
aactggagatacctggtcattgacgaagcccacagaatcaagaatgagaaatcaaagcta
tcagagatcgtgcgagaatttaagaccaccaatcgtttgttgctgactggaacacccctg
caaaacaaccttcacgagctgtgggctctgctgaacttcctgcttcctgacgtcttcaac
tcagcagacgactttgattcctggtttgacacaaacaactgcttgggtgatacaaagttg
gttgaacgtcttcacactgttctgcgtcccttcttgcttcgtcgtataaaagctgacgta
gagaagactctgcttccgaaaaaagagatcaagatgtatgtgggtctgagcaagatgcag
cgagagtggtacacaaagattctgatgaaggacattgatatactgaactcagcgggcaag
atggacaagatgcggctgctgaacgttctcatgcagctgaggaaatgctgcaaccatccg
tacctcttcgacggggccgagccgggtcctccatacacgactgacctccacctggtggtg
aacagtggcaagatggtggtgttggacaagctgctaccaaaaatgaaggatcagggttct
cgtgtgctcatcttcagtcagatgaccagggtgctggacatcttggaggactactgcatg
tggaggaattatggctactgccgcctggatggccagacgccgcacgaggagagacaggtc
tctatcaacgcatacaatgagcccaacagctctaagttcatcttcatgttgagcaccaga
gctggaggactgggtatcaacctggctacggcggatgtggtcatcctgtacgactcggac
tggaacccccaagtggatcttcaggccatggaccgagcccacaggattggtcaacagaaa
caggtacgcgtctttcgtttcatcactgaaaacacagtggaggagaggattgtggagagg
gccgagatgaaactgcgcctggactccattgtgatccagcaaggaagactcgtggatccg
agcgcaaacaagctgggcaaggatgagatgctgtccatcatccgccacggtgccacacat
gtgtttgcctccaaagagagtgagatcacagacgatgacattgatgccatcctggagaga
ggtgaaaggaagaccatggagatgaaggagaagctgtcttcactgggtgagagtactctg
agaaacttcaccatggacacagagaacagcagtgtgtacacattcgaaggagaagattat
agagagaagaaaaaggtcattaccaactggatcgagccacccaagagagaaaggaaagcc
aattacgctgtggatgcttacttcagagaggctctgcgagtcagtgagcccaaagcaccc
aaggctcctcgtcctcccaagcagccaaatgtccaggactttcagttcttccccccacgt
ctttttgagcttctggaaaaggaaattctgttctacagaaagaccataggctacaaggtt
ccccgtaatccagaaatgccaaattcagctcagctccagaaagaagagcagggtaaaatc
gacgaggctgaggctcttgcagaggaggaactggaggagaaggagaaccttctgcaacag
ggatttactatttggaacaaacgtgacttcaaccagttcatcaaagccaacgagaagtgg
ggaagagatgatattgagaacattgccagagaagttgagggaaaaactccagaggaggtc
atggagtattctgctgtattctgggagcgctgtaatgagctgcaagacattgagaagatt
atggcccagatagagagaggagaggccaggatccagagaaggattagtatcaagaaagca
ctagactcaaagattggtcgctacaaggctcccttccatcagctccgtatctcctatggc
accaacaaaggcaagaactacacagaggaggaagaccgcttccttatctgcatgctacac
aagctgggcttcgacaaggagagcgtgtatgacgagctgcgtcagtgcatacgcaactcg
cctcagttccgctttgactggttcctcaaatccaggactgccatggagcttcagaggcga
tgcaacaccctgattacactgatagagagagagaacatggagctggaggagagggagaag
gctgagaagaagaaacgtggcccaaagagtggctcagcccagaaacggaagtcagaggca
accccagatggtcgtggacgcagaaaaaagcttaagttgtga
DBGET
integrated database retrieval system
