Etheostoma spectabile (orangethroat darter): 116706160
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Entry
116706160 CDS
T08457
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116706160 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116706160 (cdc40)
Spliceosome [BR:
esp03041
]
Complex C
Other components
Step II factors
116706160 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
116706160
NCBI-ProteinID:
XP_032398702
LinkDB
All DBs
Position
18:complement(11823426..11841824)
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AA seq
581 aa
AA seq
DB search
MSATVASLVSYGSDSDSENESNLNTDVVKVDLADPDAMAHLKPLKSVPTMSVAVLNSAPE
VAVKEAVETGTHLDPSLKEVTYNPTFETMFAPEFGPINPFKSQQMAAPRNMLSGYAEPAH
LNDFMFEQQRRTFSTYGYALDPSVDTHQVSCSSYIGAVDEAEKNKGLTVFESGQKKSEKR
KKIKGGEAGEIDNFLGPWAKYIDEKDGAKPSEEEQKELDEIIAKRQKKGKNEEDAPAEEK
TILHVKDMYDYQGRSYLHIPQDVGINLRSADAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICFNNTGTQFLSAAYDRYLKL
WDTETGQCISRFTNRKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaccgtggcttccctcgtttcgtacggtagcgattctgattcagaaaatgag
tcgaatttgaatacagatgttgtgaaagtggacctagcggacccggacgctatggctcac
cttaaacctctgaagtctgtacccacgatgtccgtggctgttctgaattctgctcccgag
gtcgccgttaaagaggcagttgagacaggtacacacctggacccctcattgaaagaagtc
acctacaacccgacatttgagaccatgtttgcaccagagtttgggccaataaacccattt
aaaagccagcagatggctgcacccaggaacatgttatctggctatgcagaacctgctcac
ctcaacgacttcatgtttgaacagcaaaggaggaccttctccacatatggttatgcttta
gatccatctgttgacacccaccaggtatcctgtagtagctacattggcgcggtggatgag
gctgagaaaaataaaggactaactgtgtttgagagcggacagaagaagtcagagaaaagg
aaaaagatcaaaggtggagaagcaggagagattgacaacttccttggaccatgggcaaaa
tatatagacgagaaagatggggccaaaccatcagaggaagagcagaaagagctggatgag
atcatagccaagaggcagaagaagggaaagaacgaggaagatgcccctgcagaagagaag
actattctccatgttaaagacatgtatgattaccagggcaggtcctaccttcacatccca
caggatgtgggcatcaacctgcgttctgcagatgctcccgacaagtgttacctgcctaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgctatcagactatttcct
agctcaggtcatcttctgctctcttcctccatggactgtaagatcaagctgtgggaagtg
tacggcgagaggaggtgtatacggacatttattggtcacagcaaagcagtgcgagacatt
tgtttcaacaacactgggacccagttcctcagcgctgcctatgaccgctacctcaaactc
tgggacactgagacaggccaatgtatctcccgcttcaccaacaggaaggtaccgtactgc
gtcaagttcaacccagacgaggacaaacagagcctttttgtggccggcatgtcggataag
aagattgttcagtgggacatcaggacaggtgaggtggttcaggagtacgaccgtcacctg
ggagccgtcaacaccatcacctttgtggatgagaaccgtcgttttgtcagcacgtcggac
gacaagagtcttcgagtttgggagtgggacatccctgtggacttcaagtatattgccgag
cctagtatgcactctatgccagctgtgacactctctcccaacggtaaatggctagcgtgc
cagtcaatggacaaccagattctgatctttggagcccaaaaccgcttcagactgaacaag
aagaaagttttcaaaggccacatggtggctggctatgcctgccaagtggacttctcccca
gacatgagctatgtggtgtccggagatgcggatggaaagctgaacatttgggattggaag
accactaaactttaccacaggatcaaggctcatgacaaggtgtgcatcagcgcactatgg
catccgcatgaaacctccaaggttattacctgcggttgggatggacaaatcaaactctgg
gactag
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integrated database retrieval system
