Etheostoma spectabile (orangethroat darter): 116706206
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Entry
116706206 CDS
T08457
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116706206 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116706206 (hbs1l)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116706206 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
116706206
NCBI-ProteinID:
XP_032398790
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Position
18:complement(14168106..14191450)
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AA seq
700 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDIYGHSVDDDCCISPATANQFIYSRQERQAPKEGPLEEEEY
EDDVPMSPTISHNLDPLDQAKLYSCLDHMRTVLGDAVPDSVLTQAAIKCGFDPQKALDAV
LSEDAKTAPVTSTNEETALVARVSQEKAPLPQRTKQASVAEKAKSRDMSHNKLDSEVVAK
VARMTVSGKKQTMGFDVPSTGENGAVTASVRRGGSPENATATPTSEAPPKRPETPAKGSN
GDEPSTVPTPGRSSGKARQSINIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLL
GNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMD
APGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVA
VNKMDQVNWQQERFQDIITKLGHFLKQAGFKESDVFYIPSSGLSGENLTTRSTVSQLTSW
YSGPSLLEQIDAFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERILAMP
PNETCTVKGITLHDEAQDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIPICTRFRAR
ILLFNIEVPITKGFPVLLHYHTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGMNAIVE
IQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgttcgaggttacaactacgatgaagatttcgacgatgatgac
atttatggacattctgtagatgacgactgctgtatatcaccagcaacagcaaatcagttt
atctactctcgtcaagagaggcaagcaccaaaagaggggcctttagaagaggaagaatat
gaagatgacgtacccatgtcccctaccatcagccacaaccttgaccctcttgaccaagcc
aagctgtattcctgtctggaccatatgcggactgttttgggagatgcagtgccagactca
gtcctgacccaggcagccataaaatgtggattcgacccacagaaggctttggatgcagtc
ctgtctgaagacgctaagacagccccagttaccagtaccaatgaagagacggctttggta
gcaagagttagccaggagaaagcgccgcttccacaaagaaccaaacaagcgtccgtggct
gaaaaagctaaaagcagagatatgtctcacaataaactggattctgaagtggtagccaaa
gtggcccgtatgaccgtctcaggcaagaagcagaccatgggctttgatgttcccagcaca
ggggagaacggcgctgtcacggcatcagtacgccgtggtggcagccctgaaaatgccacc
gcaacccctacctccgaggccccgcccaagcgccctgagactccagctaaagggtccaat
ggagacgagccctccacagttcccaccccgggccgctcctctggaaaggctcggcagtcg
atcaatatcaaagctgaattggagaagaggcagggggggaaacctctgttaaatttggtt
gttataggtcatgtggatgcgggcaaaagcacactgatgggccacctgctttatctgctg
ggcaacgtcaacaagcgcaccatgcacaagtatgagcaggaatcgaagaaggcgggaaag
gcctccttcgcttatgcttgggtcctggatgaaactggcgaggagagggatagaggtgtg
acgatggatgtgggcatgaccaagtttgagacaaactctaaggtggtgaccctgatggac
gcaccaggacacaaagacttcatccccaacatgatcacaggagctgcacaggccgacgtg
gcggtgctggtggtggacgccagccgaggagagttcgaggcaggcttcgaggcgggcggg
cagaccagagagcatgccctgttggtgcggtcgcttggcgtcactcagctggctgtagct
gtcaacaagatggaccaggtaaactggcaacaagagcgtttccaagacatcattaccaaa
cttggccattttctcaagcaggcaggattcaaggagtctgatgttttctacatccccagc
agcggtctgtcaggagagaacctcaccaccaggagtaccgtgtcacaacttacctcttgg
tactcgggtcccagcctgctggagcagattgacgccttcaaagccccccagcgatctgta
gacaaaccgttcagactgtgtgtctccgatgtgttcaaagaccagggttcaggcttctgt
gttacagggaagatcgaggctggttacattcagaccggagagagaatactggctatgcct
cccaatgaaacctgcactgtcaaaggtatcactctacacgatgaggctcaggactgggcc
gcagcaggagaccatgtcagcctgacagtcaccggcatggacatcatcaagatcaatgtg
ggctgtgtgttctgtgatcccaaggagcctattccaatctgtacccgattcagagcccgg
atccttctcttcaatatcgaggttcccataaccaaaggcttcccagtattgctgcattac
cacacagtgagtgagccggccaccattaggaaactggtcagcgttttacacaagagcagc
ggtgaggtcctcaagaagaaaccaaagtgcttgagtaaaggcatgaatgccatcgtggag
atccagacccagaggccggtgtcattagagctttacaaggactacaaggagctgggccgc
ttcatgctgagatatgtcggctccaccattgcagcaggggtcgtcactgagatcaaagaa
tga
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