Etheostoma spectabile (orangethroat darter): 116706252
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Entry
116706252 CDS
T08457
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
esp03009
]
116706252 (pdcd11)
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
90S particles
Other 90S particles
116706252 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
OB_RRP5_4th
Suf
TPR_19
HAT_Syf1_CNRKL1_C
OB_RRP5
TPR_16
UTP6_C
TPR_CcmH_CycH
ARM_TT21_5th
DUF2110
TPR_15
PPR
ARM_TT21
NRDE-2
ANAPC3
Motif
Other DBs
NCBI-GeneID:
116706252
NCBI-ProteinID:
XP_032398877
LinkDB
All DBs
Position
2:23149143..23172059
Genome browser
AA seq
1846 aa
AA seq
DB search
MSFSSGLLPCRVAEKTCEFCRRFDTSETASNMASVEEDFPRGGTAKKPTESKIVVQRTEV
DNLFQSNEKAETKKRKGAVKDDGKKLKKPKTGKGDGLMLNAAAKCVEILHIKNVKEGILM
LGCVKEVTDFEVTVSLPCGMQGFLSIKNICDSYTKLLSEQLESADTEEIYSLPHIFYPGM
VFRCVVAKVDVAKGGSLSIQLSINPKLINKALTVTSLKAGMVLSGCVESVEDHGYIVDIG
ISGTKAFLQKKAVKDKHSPEDLTVGQYVTSQVEEVKNDGRVVRLSAGPPAVTQACAESEH
GWNLTNLLPGLLVKATIKKVTKHGLILDFLSSFSGQVDFLHMEPGQTSSYTEGAEVRARV
LYVEPSTRLVGLSLRSYLLQPGTRVDPSPAGGDRIGEVVRNCKITTMHHMSGAMLELPDK
TLAFVHRNHLKESNEPANENRVLAMTEHTCRILDFSAMDQIHFVSLRKSVIDKRFYRYQD
LQAGQVVEGTVTVLLNHGMLVHLSDHIKGLVPRTHLSDILLKNPEKKYIEGMKIKCRVLS
VDAENKKLYLTRKKALVESSLPLFLSYADARPGRVSHGYIVCIKDFGCIVRFYNNVKGLV
PLRELSSEPIISPEEVFFVGQVFKAKVLQCDPDKAKMVLSFKDAAEGDAEEAATAQFDCE
VGKRLEAKVLKKSVNGLEVVVLPDEVRAVLPTMHLSDHMSNCPLLWESLQEGDVVSNVMC
FNKNKQNITLTKKPTVRWSLEEGVVAKDFSEITVGMQLVGWIKNIMSYGVFVEFPYGLVG
LAPKSAMTDKFISDTITVFEPGQTVLAKVTNLDEEKRRFLVTLKMTEVISPEGDVQTRLI
NGLQERKAVAEMLATRENSDLRQQLAALSIGQKLKLTVDTAKDCAATFKSDDLAGATILA
TKHHVMGVNLTPGQKATAVILRVDILSTCVHVSLLPKLVAKKKSLAEGSKYTAMVQHIDK
DFAVISLEDTAQLTVIQTRGHLNETFLSESEKLKAGMSLAVEVIEASCQELQGLALVSWQ
RTAPNRQRTTSENQTSSKGYCFGEIVRGKVRTVKPTSLLVTLEDGSTGSVHVSEVVEGAD
VCQGSFPTASVKVGSAVTARVIGGREASSHRYLPFSHPKFTYTIPELTLIPSKLDKSPDL
KAVTVKEKINSYKVGEEVTCFVSKFNPVRKILEVTTDPCVTGTVELLAMITDPKEASHPE
KLYKLGQAVHARVVEVNSKPQRFMLSLTGVYKLEKDSVALGIVTNIQPQVGLLVKLPFGG
MGTVDVTDLADAYRPNPLDGYSKDKVFRFFLFGEEKGKWQLSLRPSRLNPHQAKPAKDPE
VLSVDQLKAGQIIRGYVKSVGEQGVFIRLSRSITGRAELQQSTKYFVNHHKVLSEHLTPN
TLLTTKILSIDKEEELVHLSLLPEDTGKPDVLPESLGLPLRLMGEEKKEHDTKKKMKRAL
SESEQKQEQSQVPKKKKKTKKAKTDDSDSGVEVYFREEEDKEVEEEPTSNSVKQVTTSSA
GPCRLQVAAGFSWDVGLSSLKPASAGQEGDSSDGEDQNGSSKPQKKSRHELEQEKKAAEK
ALVQRETELMDPSLRPQDAAAFERLLLASPNSSLLWLQYMAHHLQATQIEQARAVAERAI
KTISFREEQEKLNVWVALLNLENMYGTDETLKKVFERALQFCEPMPVYQQLADIYAKSNK
TKEAEGLYKTMVKRFRQNKAVWLSYGTFLLQQGQSDNASALLQRALKSLPSKESVDVIAK
FAQLEFRYGDSEKGRTMFDKVLTSYPKRTDLWSVFIDLMVKHGSQKEVRALFDRVIHLSV
SVKKIKFFFKRYLEYEKKHGTPQTIQAVKEKAMEFVEAKGTEAANQ
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttccgggttactaccatgccgtgttgctgaaaaaacatgtgagttttgc
cggagatttgatacgtctgaaacagcatcaaacatggcatcagtggaggaagatttccct
cgaggaggaacagcaaagaagcccacagagagtaaaatagtggttcagcggactgaagtg
gacaacttgttccagtcgaacgaaaaagcagaaaccaagaaaagaaaaggggcggtcaaa
gatgacggaaagaagctcaagaagccaaagacgggcaaaggagatggtctgatgctaaat
gcagcagccaagtgtgtggaaattctacatatcaagaatgtgaaggagggtatcctgatg
ctgggctgtgtgaaggaggtaactgactttgaggtgacagtcagcctgccctgtggcatg
caaggctttctcagcatcaagaacatctgtgactcgtacaccaagctcctcagcgaacaa
ctggagtcagctgatacagaggagatctactctctgccacacatattctaccctggcatg
gtgttcaggtgtgtggttgccaaggttgatgtagccaaaggaggctctcttagcatccag
ctgtcaatcaatccaaagctgatcaacaaggctctcaccgtaacctctctgaaagcgggc
atggtcttgagcggatgtgtggagagtgtggaggatcatggctacatagtggacattggc
atcagtggaaccaaagccttcctgcagaagaaagcagtgaaagataaacacagcccagaa
gatctgacagtgggtcagtatgtgacttctcaagtggaagaagtaaagaacgatgggcgt
gtggtccgcctttccgccggccccccggccgtcacccaggcttgtgctgaatccgagcac
ggctggaacctcactaacctgttgcctgggcttctggtcaaagctacaatcaaaaaggtg
accaaacatggacttatcctggacttcctgtcctccttcagtggccaggtggactttctc
cacatggagccagggcagacatcaagctacactgagggagctgaggtgcgagcccgtgtg
ctgtatgtggagccgtccacccgtctggtgggcctgagcctgcgcagctacctccttcag
cccgggaccagagttgacccgtctcctgctggaggtgaccgcattggtgaggtggtgcgg
aactgcaagataaccactatgcaccacatgtctggagccatgttggaactgccagacaaa
actttggcctttgtacataggaaccacctgaaggagtctaatgagccagccaatgaaaac
agagtgctggccatgactgagcacacctgcaggatcctggacttcagcgccatggaccaa
attcattttgtttctctgcgaaagagtgtgattgacaagcgtttttatagatatcaggat
cttcaggccggacaggttgtagaggggacagtgacggttctgctgaatcacggcatgttg
gtgcatctgtccgaccacatcaaagggctggtgcccaggacacacctgtctgacatcctc
ctaaagaacccagagaagaagtacatagagggcatgaagatcaaatgtcgggtgctgtca
gtcgacgcagagaataagaagctgtatctgaccagaaagaaggccctggttgaaagctct
ctgccattgttcctcagctatgctgatgcccgcccaggccgagtctcccacggctacatc
gtctgcatcaaagacttcggctgcatcgttcgtttctacaacaacgtcaagggtctggtg
ccgctcagggagctcagctctgagcccatcatcagtcctgaggaggtcttctttgtgggg
caggtatttaaggctaaggttcttcagtgtgaccccgacaaggcgaagatggtgctgtca
tttaaggacgcggcggaaggagacgcggaggaagctgccacggcccaatttgactgtgag
gtggggaagaggctggaggccaaggtgctgaaaaagtcagtcaacggtctggaggtggtc
gtcctccctgatgaggtccgagccgtactacccacgatgcacctttctgatcacatgtcc
aactgccctctgctgtgggagagcctgcaggagggagacgtcgtctcaaacgtcatgtgc
ttcaacaagaacaaacagaatattaccctcaccaagaaaccaacagtgagatggtccctg
gaggaaggagttgttgccaaggacttctctgaaatcacagttggaatgcagctggttggc
tggatcaagaacatcatgtcttatggtgtttttgtggagttcccatacgggcttgttggt
cttgcacccaagtcggccatgaccgacaagttcatcagcgacacgataaccgtcttcgag
cccggccagacagtgctagctaaagtgaccaacctggatgaggaaaaacggcgtttcctg
gtcacactgaagatgacagaggtcatatctccagagggggatgtccagaccagactcatc
aatggtctgcaggagagaaaagctgtggctgaaatgttagcaacgagagagaacagtgat
cttcgccagcagctggccgctctgtccattggtcagaagctgaagctgactgtagatact
gcgaaggactgcgctgccacctttaagtcggatgatttggccggtgctaccatactagcc
accaagcaccatgtcatgggtgttaatttgaccccaggacagaaagctactgcggtcatc
ctccgtgttgacatcctgtcgacgtgtgtccatgtgtccctccttcccaagctggtggcg
aagaagaaatcgttagctgaaggatcaaagtacacagccatggtgcagcacatcgacaaa
gactttgctgtcatctcgctggaagacacggcacagctgactgtgatccaaaccaggggc
cacctgaacgagacatttctgtccgagtcagagaagctgaaggcggggatgagtttggcc
gtcgaggttattgaagccagctgtcaggaactgcaggggctcgccctagtgtcgtggcag
cgcactgcaccaaaccgacagcgcaccacctcggaaaatcagacgagctctaagggttac
tgcttcggcgaaatcgtgcggggtaaagtacggaccgtgaagcccacgtcccttctggtc
acactagaggatggaagcactggcagcgtgcacgtgtctgaggtggtggagggtgcagat
gtgtgtcagggatctttccccactgcctctgttaaagtgggcagtgcggtcaccgccagg
gtcatcgggggccgagaagcctccagtcacagatacttgcccttctcccatcccaaattt
acatacaccattcctgagctcacactcatacccagcaaacttgataagagtccagatctc
aaagcagttacagtaaaagaaaaaataaacagctataaggtcggggaagaagtgacatgc
tttgtatcaaagtttaatccagtgaggaagattttggaggtcaccactgatccttgtgtt
actgggacagttgaactgctggccatgatcaccgatccaaaagaggccagccacccagaa
aaactgtacaagctgggccaagcagtccatgccagagtggtagaagtgaactccaaacct
caacgctttatgctgtcactcacaggtgtctataaactggagaaagacagtgtagctttg
gggattgtgactaatattcagccacaagttggcctcctggtcaaacttccctttggtggc
atgggaactgttgatgtcactgacctggctgatgcctacagaccaaaccccctggacggg
tacagcaaggataaggtgttcaggtttttcctttttggggaagaaaaaggcaagtggcag
ttgtctctacgtccatcaaggctgaacccacatcaggccaagccagcgaaggacccagaa
gttttgtctgtagaccaactgaaggcaggccagatcatcagaggctatgtcaagtccgtg
ggagagcagggggtcttcatcaggttgtcaagaagcatcacaggaagagctgaacttcag
cagtccaccaagtactttgttaaccatcacaaagtcctctctgagcacctgactcccaac
accctgctcactaccaagatcctcagtattgacaaagaggaagagttggtccacctctcg
ctgctcccagaggacaccgggaagccagacgtccttccagagtctctcggtctgccgctg
cgtctgatgggagaggagaagaaggaacatgacactaagaagaagatgaaacgtgctttg
tctgagagcgagcagaaacaagaacagtcccaggtccccaagaagaagaagaaaaccaag
aaagcaaagactgatgacagtgacagcggagtggaggtgtacttcagagaagaggaagac
aaggaagttgaagaagaacccacatctaattctgtaaaacaggtgacgaccagctcagcg
ggtccatgcaggctgcaggtggcagcaggtttctcctgggatgtgggactgagctccctg
aagcctgcctctgcaggacaggagggggactccagtgatggagaggaccaaaatggaagc
agcaagccccagaaaaagtctcgtcatgaacttgagcaagagaaaaaggccgcagagaag
gccctggtacagcgtgagactgagctgatggatccgagcctgcgaccccaggacgcagcc
gcctttgagcgcctgctccttgcttcacccaacagctcactgctttggctccagtacatg
gctcaccacctacaggccacccagattgagcaggcccgcgctgtggccgagagggccatc
aagaccatctcctttagggaagagcaagagaagctgaatgtgtgggtggccctgctgaac
ctggagaacatgtacggcacagatgagaccctgaagaaagtgtttgagcgggcgctgcag
ttctgtgagcccatgcctgtgtaccagcagctggctgacatctacgcaaagtccaacaaa
accaaggaggcggagggcctgtataagacgatggtaaagcgtttccgtcagaacaaggca
gtgtggctgagctacgggaccttcctgctccagcagggtcagagtgacaatgccagtgct
ctcctgcagagggcgctcaagagtctgccctccaaagaaagtgtggatgtgatcgccaag
ttcgctcagctggagttccgttatggtgattcagagaaaggtcgcaccatgtttgacaaa
gtcttgacgagctacccgaaacgcacggacctctggtccgtcttcatcgaccttatggtc
aaacatggatcacagaaagaagttagggcgctctttgatcgcgtgatccacctgagtgtt
tcagtaaaaaagatcaagttcttcttcaagcgctacttggagtacgagaagaagcatggc
actcctcagacaatccaggcagtcaaggagaaggccatggaatttgtggaagctaaaggc
acagaggctgccaaccaatga
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