Etheostoma spectabile (orangethroat darter): 116706274
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Entry
116706274 CDS
T08457
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116706274 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116706274 (taf5)
03036 Chromosome and associated proteins [BR:
esp03036
]
116706274 (taf5)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116706274 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
116706274 (taf5)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116706274 (taf5)
STAGA complex
116706274 (taf5)
TFTC complex
116706274 (taf5)
SAGA complex
116706274 (taf5)
SLIK complex
116706274 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_VPS8
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
LisH_PAC1
PROPPIN
CDK5RAP3
Beta-prop_ACSF4
LisH_TPL
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
116706274
NCBI-ProteinID:
XP_032398912
LinkDB
All DBs
Position
2:23141810..23147591
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQGGLADTNEEKDIKTEPSNDGFGNNNATDGRVLSTSPGSSASAGINKSAAGAPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLELKGSDSSGAGSGGAAGSGDKEGGDAS
ALLSRVTISSSAAAQAPTKAAGEDQPDVNVVLSAYNQQGDPPLYQVYYSGLKKFIESVLD
CHRAELSQLFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEDDLRILSSLSKREH
MRGNETLMDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKG
QIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
THFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADVTCTRFHPNSNYVATGSSDRT
IRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMIGELKGH
TDTIYSLRFSRDGEILASGSMDNTVRLWDALKAFDDLETDDFTAATGHVHLQDNSQELLL
GTYMSKSTPVIHLHFTRRNLLLATGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtctggccgacacgaacgaagaaaaagacataaaaacagaa
ccatcaaacgatggctttggaaataataatgccaccgacggaagagtgctctctacgtct
cccggttccagtgcttcggctggaattaataaatctgcggcaggagccccggaggaccag
cagacgctgctggccgtcctgcaattcctcaggaagaacaaactgaccgagtccgtcgaa
attttgcgtcgtgaagcgggattaccggaggattcactggaactgaaggggagtgattcc
tccggtgcaggttcggggggtgctgcgggcagtggggacaaagaaggcggggatgcgagc
gctcttctcagccgggtgaccatctcatcctcggctgcagctcaggcgccaactaaagct
gctggggaggatcagccagatgtcaacgtggtgctgtcagcttacaaccagcagggagac
cctccgctgtaccaggtttactacagcggcctgaagaagttcatagaatcggttttggac
tgtcacagagcagagctgtcccagctcttctacccactgtttgtgcacatgtatctggaa
ctggtgtacaacaatcacgaaagtgaggccaaggcgttctttgaaaagttcagtggtgat
caagagtgttactacgaagacgacttgcgtattttgtccagcctgtccaagagggagcac
atgagaggcaacgagaccctgatggacttccgcaccagcaagtttgtcctgcgtatctcc
cgtgactcttaccagctgctaaaaaggcacctgcaggagcgtcagaacaaccagatctgg
aatatcatacaagagcacctctacattgacatctttgatggcatgccgcgcagcaagggc
cagattgatgccatgtccggcagcttggcgggagagggcaagcgagaggccaacaaggct
aaggtttactatggattgctgaaggaaccggaaattgagctgcctcttgatgatgaggac
gaggaagcagagaatgaggagggtaaacccaagaagaagaaacccaaaaaggacagcatg
ggctccaagagcaagaagcaagatcctaatgcaccttcacaaactaggatacctcttcca
gaactgaaggattcagacaagctggataagatcatgtacatgaaggaggccaccaagagg
atccgcctgggaccagataacctgccctccatctgcttctacagttttctcaatgcttac
cagggtctgactgcagtggacttcacagatgactccagcctgattgcgggaggcttcgct
gactccacagtacgggtgtggagtgttacaccgaaaaagctccgcaaggtcaagtctgca
gcagacttgaatctgatcgacaaagagtcagacgatgtgctggagaggatcatggatgag
aagacggccagtgagtcaaagatcctctatggacatagtggcccggtgtatggcatcagc
ttcagcccagacagaaactacttattgtcgagttctgaagatggtacagtcaggctatgg
agtctccagacatttacttgtctggtgggctacaaaggccacaactacccagtgtgggac
acccacttttccccccatgggtactattttatctccgggggacatgaccgagttgcccgt
ctgtgggctacagatcactaccagcctctacggatgttttctggtcacctagctgatgtc
acgtgcacccgcttccaccccaactctaattatgtggccacagggtcttctgatcgcacc
atccggctctgggatgtcctgaacggaaactgtgtccgcatcttcaccggtcacaagggt
cctatccatgcactggccttttctcccaatgggaagttcttggcttcaggagccactgat
ggcagagttcttctgtgggacattggtcatgggctgatgattggagagcttaaaggccac
acagataccatctactcgctccggttcagcagagacggagagatccttgcttccggctca
atggacaacacggttcgtctgtgggatgccctgaaagcttttgatgatttagagaccgat
gatttcacagcagctacaggacacgtccatctacaagataactcccaggagcttctgctg
ggaacctacatgtctaaatctacacctgttatacaccttcacttcacccgcaggaacctg
ctgctggccactggggcctacaatccatga
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