Etheostoma spectabile (orangethroat darter): 116706782
Help
Entry
116706782 CDS
T08457
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03008
Ribosome biogenesis in eukaryotes
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116706782 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
116706782 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116706782 (xrn2)
03019 Messenger RNA biogenesis [BR:
esp03019
]
116706782 (xrn2)
03009 Ribosome biogenesis [BR:
esp03009
]
116706782 (xrn2)
03016 Transfer RNA biogenesis [BR:
esp03016
]
116706782 (xrn2)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116706782 (xrn2)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116706782 (xrn2)
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
Pre-60S particles
RNases
116706782 (xrn2)
Transfer RNA biogenesis [BR:
esp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116706782 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
116706782
NCBI-ProteinID:
XP_032399684
LinkDB
All DBs
Position
18:complement(3838174..3883740)
Genome browser
AA seq
974 aa
AA seq
DB search
MGVPAFFRWLSRKYASIVVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKTRIREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAD
RLSNDPGWKNITVLLSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQMGHEIKDCQGVAREKQGEHDEFADTMPVSEQE
FIFIRLCVLREYLTRELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTENGYVNLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KRKRMKAEQRGPAYMTTGQFAPQALGRRDRPEAVQNARHQAYDMRMQHNKDAAQFLKATM
KNGGNSSAGASGSADNRGMKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDVEDED
FRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFEKDTKPFK
PLEQLMGVFPAASGNFLPPTWRSLMSSPDSPIIDFYPDDFAIDLNGKKYAWQGVALLPFV
DERRLRTALADVYSDLTSEEVRRNSLGSDVLFLGRSHPLFDFIHELYRTESHEDTEIPAE
LCHGILGTLNLDDNPILPDKPVTSPIPMLRDISQNSAICVKFKDPHFAEGFVFKAVLLSG
AKMPNKVLKPGDWEKGNREPWRPQLGFNQHRQQAHLNQSGFRALGHSLNRNQHGGQYSNA
PPPSNYQQGNYHSSHRGGHQPFQHSRQNSLLGAPPSYHQPQYPRQQQQPPPPQPYGASRG
HGWDRAAQSQQSAYQQNMSRGQGGAPQGGSYQQRYNDRQDDWRGRRDPRGQPHQGYSSGR
GYPAPPPSRRYNWN
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagcagaaaatatgcgtcaatcgttgtgcat
tgtgtggaggaaaaggggaaagaatgtaatggagtccgtatccctgtcgatacgaccaag
ccaaaccccaacgaggtggagttcgacaacttgtacttggacatgaacgggatcattcac
ccttgtacacatccagaagacaagcccgctcctaaaaatgaggacgagatgatggtcgcc
atttttgagtacatcgaccgtctgttcaatatcgttcgacccaggagagttctctacatg
gccatcgatggagtggctccgcgggccaaaatgaaccagcagcgctctcggcgctttcgg
gcctccaaagaaggagtggagttgacagaggagaagactcgcataagggaggaggtcatt
cagagaggaggttatcttccacccgaggagattaaagagaggtttgacagcaactgcatc
actccaggaacagagttcatggacaacctggcacagtgtcttcgttactacgtcgcagac
agactcagcaatgatccaggatggaaaaacatcacggtccttctgtctgatgctagtgtt
cctggggaaggtgaacacaagattatggactacatcaggagacagagagctcagcccaac
cacgaccccaacacacaccactgcctgtgtggagctgatgctgacctcatcatgctgggc
ctggccacccacgagccaaacttcaccatcatccgagaggagtttaaacccaacaaaccc
cgcccatgtgcgctctgtggacagatgggtcatgaaatcaaagactgtcagggtgtggcc
agagagaaacagggagagcatgatgagtttgcagacacaatgccagtgtctgaacaggag
ttcatatttatcagactgtgtgtgctacgggagtacctgaccagagagctgaccatggcc
agcctgccgtttccctttgactttgagaggagcgtagacgactgggtcttcatgtgtttc
tttgttggaaatgacttcctgccgcacctgccgtccttagagatcagagagggagcgata
gatcgactggtcaacatctacaaagacgttgtgcacaaaactggaggctacctaacagag
aacggctacgtgaacctggagagggtggagctgatcatgcaggcggtgggcgtggctgag
gacaacatcttcaagaaacgcaaagaggacgatgaaggctttaagagaagaatgaaagag
aaacgaaaaaggatgaaggcagagcagcggggtcccgcctacatgaccacgggtcagttt
gcccctcaggccctggggagaagagaccgacccgaggccgtccagaacgcccggcaccag
gcctacgacatgaggatgcagcacaacaaggatgctgctcagttcctgaaggccacaatg
aagaacggtggcaattcgtctgcaggggccagcggcagcgcagacaaccgggggatgaag
aggaaagctgaggacagtgacagcgagccggagccggaagacaacgtcaggttgtgggag
gacggctggaagcagagatactacaagaccaagtttgacgtggacgtggaggatgaggac
ttcaggaagaaggtggtcaagtcgtacgtggagggtctctgctgggtgctgcgctactat
taccagggctgtgcctcctggaagtggtacttcccgttccactacgctccgttcgcctcc
gacttcaaagacatcaaagggatgttcaccgactttgagaaggacaccaaaccgttcaag
ccactggagcagctgatgggagtgtttcctgccgccagcggcaacttcctgcccccaaca
tggaggagcctcatgagcagtcctgattctcccatcattgacttctaccccgacgacttt
gccattgatctcaacggcaagaaatacgcctggcagggtgtggccttgttgccgttcgtg
gatgaacgtcggctgaggacggctctcgcagacgtttactccgacctcacatccgaggaa
gtgagaagaaacagcctgggcagcgacgtgttgtttctcggacggtctcacccgctcttc
gacttcatccacgaactttaccgaacagaatctcacgaggacactgagatcccggcagag
ctgtgccatggaatcctaggtacattaaatcttgatgacaaccctattttaccggataaa
ccagtgacttcacccatcccaatgctgcgtgacatttcacagaacagtgcaatctgtgtg
aagttcaaggatccccactttgcagaaggctttgtgttcaaggcagtcctcctgtctgga
gccaagatgcccaataaggtcctgaagccaggggactgggagaaggggaacagggaacca
tggaggccccagctgggcttcaaccaacacaggcagcaggctcacctcaaccagtccggc
ttccgtgctctgggccacagtctgaacagaaaccagcacggcggacagtacagcaacgcc
ccgccgccgagcaactaccagcaaggaaactaccattcgtcacataggggcggccaccaa
cctttccaacattccaggcagaacagtttgctgggagcgcctccttcttaccaccagccc
cagtatccaaggcagcagcagcagccgccgcccccccagccgtacggggccagccggggc
cacggctgggatcgggccgcgcagtcgcagcagtcggcctaccagcagaacatgagccgc
gggcagggcggggcgccgcagggggggtcctaccagcagcgctacaacgaccgccaagac
gactggcgcggtcgcagggacccccggggacaaccgcatcagggctacagctccggccga
ggttaccccgctccgcctccgtccaggagatacaactggaactaa
DBGET
integrated database retrieval system
