Etheostoma spectabile (orangethroat darter): 116706859
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Entry
116706859 CDS
T08457
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116706859 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116706859 (cpsf2)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116706859 (cpsf2)
U7-dependent histone pre-mRNA processing factors
116706859 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
116706859
NCBI-ProteinID:
XP_032399787
LinkDB
All DBs
Position
18:7969580..7978339
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDELLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKDLEEYLEKEKVKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPAAVKTKHHDLMMKSEGSRKGSFFKHAKKSYPMFPTHEERIKWDEYGEI
IRLEDFLVPELQATEEEKNKLESGLTNGDEPMDQDLSVVPTKCVSSVENLEIRARISYID
YEGRSDGDSIRKIINQMKPRQLVIVRGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKDEAEDGE
LAMDVAPDLTIDQDATAVAAQRAIKNLFMEDEKEVSEESDVIPTLEPLPPHEISGHQSVF
INEPRLSDFKQILLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagttgacagccgtgtcaggggttcaggaggagtcggccctctgt
tacctgctgcaggtggatgaattccgcttccttctggactgtggctgggatgagaacttc
tcaatggacatcattgatgctatgaaaagatatgttcatcaggtcgatgctgtgctcctc
tcccaccctgaccccatacacctgggagccctgccatatgctgtggggaaactgggccta
aactgcactatctatgcaacaattcctgtctacaagatgggtcaaatgttcatgtatgat
ctatatcagtctcgaaataacagtgaagatttcacactgttcaccctcgatgatgtggat
tgtgcttttgataaaatccagcagttaaaatactctcagattgtcaatctaaaagggaaa
gggcacggtctttccatcactcctcttccagctgggcacatgattggaggcactatttgg
aaaattgtgaaggacggagaggaggagattgtttatgctgtggacttcaaccacaagaga
gaaatacacctcaatggctgcacgttggagagcattagtcgtccttccttgcttatcaca
gactccttcaatgctacatatgtacagccacgtcgcaaacagagagatgagctgctcctt
accaatgtaatggagacccttcgtggtgacggtaatgtccttattgccgtggatacagct
gggcgtgtgttggagctggctcagctcctggaccagatctggaggacaaaggatgctggg
ctgggagcctacccactagctctgctcaacaatgtcagctacaacgtggtggagttctct
aagtcacaggtggagtggatgagtgacaagctcatgaggtgttttgaagacaagaggaac
aaccccttccagttccgtcacttgaccctgtgccacagtctggcagacctggcccgggtg
cccagtcccaaggtggtgctttgcagccagccagaccttgagtctggcttttccagagaa
ctcttcatccagtggtgccaagacgccaaaaactctgtcatcctgacctaccgcaccaca
cctggaaccctggcccgctacctcatcgacaaccctggagagaagatgctggatctggag
gtgaggaaaagggtgaaactcgaaggcaaggatctggaagaatatcttgaaaaggagaaa
gtaaagaaagaagctgctaaaaagcttgaacaagcaaaagaggtggatgtagactcgagt
gacgagagcgatatggacgatgatctggaccagccagctgcagtgaaaactaaacaccac
gacctgatgatgaagagcgaggggagccgcaaaggcagcttcttcaaacacgccaaaaag
tcttatcctatgttccccacacatgaagagagaatcaaatgggacgagtatggggaaatc
atcaggctagaagacttcctggttcctgaactgcaagccacagaggaggagaaaaacaaa
ctggaatccgggttgaccaatggggatgaacccatggaccaggatctctctgttgttccc
accaaatgcgtctccagtgtggaaaatctggaaattagagcgagaatctcatacatagac
tacgaaggtcgctctgatggcgactccatcaggaagattattaatcagatgaagcccagg
cagctggtgatcgttcgcgggccgccggaagctagtctggacctggcagagtcctgcaag
gcattcagcaaggacatcaaagtctacacacccaaactgcaggagactatagacgccacc
agtgaaacacacatctaccaggtgcggttgaaagactccttggtgagctccttgcagttc
tgcaaggccaaagacacagagctggcctggatcgacggcgtgctggacatgcgcgtggtg
aaggtggacacgggtgtgatgctggaggagggggtgaaagacgaggcggaggacggtgag
ctggccatggacgtggcccccgatctcaccatcgaccaagacgccacggcggtggcagca
cagcgcgccatcaagaacctgttcatggaggacgagaaggaggtgtccgaagagagtgat
gtcattcccacgctggagccactgcctccacacgagatttcagggcatcagtcggtgttc
atcaacgagcctcgcctgtcggactttaagcagatcctgctgagagagggcatccaggcc
gagtttgtgggaggagtgctggtatgcaacaacatggtggccgtccgcaggacggaggca
ggacgcattggcctggaaggctgcctgtgtgacgactactataagatccgggagttgctg
tatcagcagtacgccgtggtatag
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