Etheostoma spectabile (orangethroat darter): 116706909
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Entry
116706909 CDS
T08457
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116706909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116706909
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116706909
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
116706909
NCBI-ProteinID:
XP_032399841
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Position
2:15840507..15853788
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AA seq
561 aa
AA seq
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MSAEEADKTTTTDASAGDEEEEWLYGDESESKDEDEEAKLNAAVSAPADASTEDDAAAAA
HATGNGVASEATGEGAGEGAGEDVDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVN
LNIKTTGSRPYGQASKIKGVDLDAPGNINGVPVLEADMESFEEKPWRKPGADLSDYFNYG
FNEDSWKAYCEKQKRLRMGLEVSTVGSVTSKITVQQGRTGNEKDISTLPVHTSKPDFTSP
ISLYKPSVSQVPRISPPQWPGPPLQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEG
NNIQVIAEQSDAEPTQAKIPTFFPPGPLPPNIPPPPFLPPPPNVNTAPPLIPPPRLPITV
PPPGFPPPPSGPPPSIMPTMDSGHPGGYDGRSVPPYPFPQGAYPPLMAGGVPPPWPPMMD
NSKPWDYYSRRDDKREKERERPRERERTHEREREREHSPSAMGYTSEEERYRYREYQERG
YAERHRERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRS
KEGKEANEEISADQENQEAME
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaaacaaccaccactgatgccagcgctggagatgaggag
gaggaatggctatatggagatgagtctgagagcaaagatgaggacgaagaagccaaactg
aatgctgcagtcagtgcacctgctgatgcttcaacagaggatgatgctgctgctgctgca
cacgctacaggaaatggagtagcctccgaggcgacaggtgaaggtgcaggtgaaggtgca
ggcgaggacgttgacagtgacagcgacagtgatgatgatgatgatgatgtccgcgtcacc
attggagacattaaaactggagcaccacagtacacgacttatggcgctccacctgtcaat
ctcaacataaagacaacaggctccagaccttatggacaagcctccaagataaagggagtg
gatctggatgctcctggaaacattaacggggttccagtgctggaggcagacatggagtcc
tttgaggagaaaccctggcggaagccaggagcggatctgtcagactactttaactacggc
ttcaatgaagactcatggaaggcttactgtgaaaaacaaaagagactgcggatgggcctg
gaggtttctactgtcggctcggtgacaagcaagatcactgttcagcaaggcaggacaggt
aatgagaaggacatatccactttgcctgttcacacctccaagccagacttcacatctcct
atcagcttgtacaagccttctgtcagtcaggtccccaggatctctccccctcaatggcct
ggcccacctcttcaggacatgtcctattatacgaagacgagtggtactatagacgtgatt
ggtggagggacggccaccatcagcagggttgaagggcgacgcagacacaatctagaaggc
aacaacatccaggtaatcgctgaacaatcagacgctgagccgactcaagctaagattccc
accttcttccctcctggaccacttcctccaaacatccccccacctcctttcctgcctccg
ccacccaatgtcaacacggcacccccactcatccccccacccaggttgcccattactgtc
cctccccctggttttcctcctccacctagcgggccccctccttctatcatgcccactatg
gacagtggccaccctggaggttatgatggacgctctgtacctccctaccctttccctcaa
ggtgcataccctccactcatggctggaggggtgcctcctccttggccccccatgatggac
aactctaaaccctgggactactattcccgtcgagacgacaagagagaaaaggaaagagag
aggcccagagagagagagaggacacatgagcgagaaagagagagggagcacagcccttca
gctatgggctacaccagtgaagaggagcggtatcgttaccgcgagtaccaggagcgtggt
tatgcagagcgacatcgtgagcggtcgagccgagagaaagaggaacgacacagagagaga
cggcaccgagagaaagaggagggtcgccacaagtcctctcgcagcagtagcaggagaagg
cacgacagcgaggagggcgacagccaccggaggcataaacacaagaagagcaaaaggagt
aaggagggcaaagaggccaacgaagagatcagcgcagaccaggagaaccaggaggccatg
gagtag
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