Etheostoma spectabile (orangethroat darter): 116707101
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Entry
116707101 CDS
T08457
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116707101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116707101
03009 Ribosome biogenesis [BR:
esp03009
]
116707101
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116707101
Spliceosome [BR:
esp03041
]
Complex A
U2 snRNP components
U2 related factors
116707101
Complex B
116707101
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116707101
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
90S particles
Helicases
116707101
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
SRP54
Cas3-like_C_2
Flavi_DEAD
AAA_29
nSTAND_NTPase5
AAA_25
nSTAND3
Motif
Other DBs
NCBI-GeneID:
116707101
NCBI-ProteinID:
XP_032400154
LinkDB
All DBs
Position
19:885254..913959
Genome browser
AA seq
756 aa
AA seq
DB search
MFKRHRLDLGDDSPSKKRPSDERDRDRDRDREERSRDRDRDRDRDGDRDVKSSAAPNSLA
AGSGGFLKQTPILQPINPFTNLPHTPRYHEIMKKRLQLPVWEYRERFTDILMCNQSFVLV
GETGSGKTTQIPQWCVDMVRSMPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGY
SIRFEDCSSPKTLLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEV
VRQRADLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTV
IQIHMCEVDEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQR
IFEPPPPNKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVT
AISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGI
DDLVHFDFMDPPAPETLMRALELLNYLAALNDGGDLTELGSMMAEFPLDPQLAKMVIASC
EFNCSNEILSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHMTLLNVYHAFKQNHD
STQWCYENFVNYRSLMSADNVRQQLSRIMDRFNLPRKSTEFSSRDYYTNIRRALVTGFFM
QIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKPEWLV
KIAPQYYEMGNFPQCEAKRQLERIIAKISSKEHTQY
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagcgacatcgcttagatttgggtgatgattcgccgagtaaaaagagaccctct
gatgagcgtgaccgtgacagggacagagaccgtgaagaacggtcgagggacagggaccgt
gatcgagaccgtgacggggacagagatgtgaagtcttcagcagcacccaacagtctagct
gcaggcagtggaggcttccttaagcaaacccccattttgcagccgatcaaccccttcacc
aacctgccccacacgccacgctaccatgagatcatgaaaaagcggctgcagctgcctgtc
tgggagtacagggagcgcttcactgacatcctgatgtgtaaccagtcgtttgtgctggtg
ggagaaacaggctctggaaaaaccacacagatccctcagtggtgtgtggacatggtgcgg
tcaatgccgggaccaaagagagcagtggcctgcacccagcccaggagggtagcggccatg
agcgtcgcccaaagggttgctgacgagatggatgtcatgctgggccaagaggtgggctac
tccatcaggtttgaggactgcagctctcccaagaccctactcaagtacatgacagatggg
atgttgttgcgggaggctatgaatgatcctctgctggagcgctatggtgtcatcatcttg
gacgaggcacacgaacgcactttagctacagatattctcatgggggtcctcaaggaggtg
gtccgccagagggctgacctcaaggtcatcgtcatgagtgccacactcgatgccggaaag
ttccaggtgtactttgacaactgcccactgctaaccatccccggacgcacccaccctgtg
gagattttctacacgccggagcctgagcgggactacctggaggcggccatccgcactgtg
atccagatccacatgtgtgaggtggatgaaggggaccttctgctcttcctcactggacaa
gaggaaattgatgaagcctgcaagcgaatcaagagggaggttgacgacctggggccggaa
gtcggtgatatcaagatcatcccgctttactccacactgcctccacagcagcagcagagg
atctttgagccacccccacccaataaaccaagtggtgccatcggaaggaaggttgtcgtg
tcaacaaacatcgctgagacatccctgaccatcgatggcgtggtgtttgtaattgatccc
ggatttgccaagcaaaaggtatataacccacgtatcagagtggaatcccttttggtgaca
gccatcagcaaggcctcggcccagcagagggcaggtcgtgctgggcggacacgcccaggg
aagtgtttccgcctttacacagagaaagcttacaagacagaaatgcaggacaacacgtat
ccagagattctgaggtctaatctgggctctgtggtgctgcagctgaagaaactgggtatt
gatgacctggtgcactttgactttatggacccaccagccccagagaccctgatgcgagcc
ctggagttgctgaactacctggcggcgctcaatgacggtggtgacctgacggagctgggc
tccatgatggcagagttccccctggacccccagctggccaagatggtcatcgccagctgt
gaattcaactgttcaaacgagatcctctccatcacggccatgttgtcagtcccacagtgc
ttcgtccgacccacggaggctaagaaggtggccgacgagtctaagatgcgctttgcccac
atcgacggagaccacatgacgctgctcaacgtctaccacgcctttaaacaaaaccacgac
tctactcagtggtgctatgaaaattttgtcaactaccgctcgctgatgtcagcagacaac
gtgcggcaacagttgtccaggatcatggaccgcttcaacctgccgcggaagagcactgag
ttcagcagcagagactactacaccaacatccgccgtgcgctggtcactggcttcttcatg
cagatcgctcacctggagcgcacaggccattacctgacggtgaaggataaccaagtcgtc
cagctgcacccatccactgtgctggaccacaagccggagtgggtgctttacaacgagttt
gtgctgaccaccaagaattacatccgcacgtgctccgacatcaaaccagagtggctggtg
aaaattgccccgcagtactatgagatgggtaacttcccccagtgtgaagcaaagagacag
ttggagcgtatcattgcaaaaatctcatccaaggaacacactcagtactaa
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