Etheostoma spectabile (orangethroat darter): 116707117
Help
Entry
116707117 CDS
T08457
Name
(RefSeq) synaptopodin-2-like isoform X1
KO
K24066
synaptopodin-2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116707117
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
esp04990
]
116707117
Domain-containing proteins not elsewhere classified [BR:
esp04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
116707117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
116707117
NCBI-ProteinID:
XP_032400189
LinkDB
All DBs
Position
19:1731004..1749547
Genome browser
AA seq
1588 aa
AA seq
DB search
MGTGDYICATLRGGAPWGFTLREGEGDTYRPFLVSQVEQGGRAFLAGVREGDEVVSLNGE
PCAYLTLSRAFALIDTSIDCLQLLVKRYCTTPKEDYESEETYCGERDSSGEALESTTIHI
FSQKQKSQSPRKLYISESQDEASYGELDSNKEFPKGPQLLHTQLCVPSHGDRRGREPVFK
ENDKEARCCFSPGDMVELQVSLSEQTLDDVGCTSLGSAHGIEGELSNKEAIETIHTTTAS
HYVPCSVREPLGQRGVVLSSPLMLGHVEVILQQPAASGAGRGILSVGGPRVSGSVGSQSE
GEEEGHCERVSGSSAVSFRAPSEEVTPAEEQDSDSEGDPDKPNKHRARHARLRRSESLSE
KQVKEAKSKCKRIALLLTAARSNPNNKGVLMFKKHRQRAKKYTLVSYGTGEDEPEYSDEE
YEENEDNKQETHTVEFTLVAPNASEIDKHFLTNAHSSKGVLTINWDKGLLEIERNLNNQA
EMECLPDTKGKGAVMFAQRRQRMDEIAAEHEELRRQGIAVEGVQIADKKIEEHSYMQSRT
EGHAYMDVNVHQQSQHQQQYQQYQEQQYYEQQQNYQQQQQQQYQQQQQYEQQLYQQQQMY
QKQQEYHQEQQQMQHYSANINGTVQHEMQGSLNNRTAQPFSVENMATSPYSPAMSGVNQD
SVGQGEQIASRDERISTPASRTGLLSDCRRRNAGKPMFTFKEAPKVSPNPALLNLLNRND
KKLGFESGPEEDYLSLGAEACNFLQSQRNKQKNPPPVAPKPVINPNSPPWFPPIEVSNQD
MPQQAENSVSTPAVAPTTETTLAPELEPNPAPASEPSPPPAPQKALASATTEEQCPCTLP
EPESQQQLLQVTAQENGHMNSILQPEPAPVTSWAQAQTQPQQQASNNSWHPAQVQPQEPP
QSQSPPQPPWVTRHPTQTQALPQTPTNNWTPQIQPSWSQHQEQAQAQTHAQPSWNMRQEQ
PKSHPQAQPPWTHSHEQPNLQQMQPTWGQLQEPMQQQPQAPWAQPSQTEHQHQPPWVQPL
QKSQVQPPWAQQVQPESQPQPPWVQQPQHQAPQQAWPQAQAPGQPQTSWVSVQPQQQPSN
NAWPPSQTQVQPPWIQAAQAQPPAPPQAILNPWPPVPAQAQSQPSWAQHPSEHGQTPINS
WAQEQNQAQQQPPWAQPVPPQPTPQPNWQQSTSKTPPQPPMNAWPPPQAQPQTPVDAWVP
QSKPTPVNVSTSMVNTRPSPKPWHSPQNAPQNRTPPTPPQRMHSFTIGQRASSPINPMAT
VLNPSSQGSAFEMPAVRGKGADMFAKRQSRMEKFVVDSETVQANKASRSTSPVASLPNEW
KYTPNVRAPPSRAYNPIQSPSYPPAATKQPPPSSPLTKAKTKAKEKQKPAPKPLSVVDVM
KHQPYQLNSSLFTFGPATEAANPPEPKPDISPPNPPVENQTITYEQMAPIQPVGPYNVPS
PQYPQQAYGMPMQPIMHDGHYQQNPANIYPHPNPYQQPPGGPYQQAYNQQFQQPLPPAYN
PQAPQSPNPTYQQAPQAPYPPANSPPYLAAPSVPYQPQPPSSYVVPCFPVAARPESVSGG
NTVAAPKPKFTAKKSSAQVWKPTAVDKE
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggggattacatctgcgctacgctgcgtggtggggcaccctggggattcacc
ctaagagagggggagggggacacctacagacctttcttagtttcccaggtagaacaaggt
ggtcgtgccttcctagctggagtgcgagaaggtgacgaggtggtgtcactcaacggagag
ccatgtgcatatctcaccctttcacgagcctttgcactcattgacacatcgatcgactgt
ctgcagctgcttgtcaaaagatactgcactacccccaaagaagactatgaatcagaagaa
acatactgtggtgagagggactcctctggtgaggctttagagagcaccaccatccatatc
ttctcccaaaaacagaagtcccaaagcccaaggaaactctacatatctgagtcccaggac
gaggcctcttatggggagttggacagcaacaaagagttccccaagggaccccagctgctt
cacacccagctatgtgttccctcacatggtgatcggagaggcagggagcctgtttttaag
gaaaatgataaagaagcacgttgttgcttctcccctggggacatggtcgagctccaggta
tccctgtccgagcaaaccttggacgatgtgggctgcacctctcttgggagtgctcatggg
atcgaaggagaactctcaaacaaagaggctattgagacaatccacaccactaccgcatca
cactacgtaccatgttctgtcagagagccgctcggccagcgtggagtggtgctcagctct
cctttaatgctggggcatgtggaggtcattttgcagcagccagcagcatcaggagcaggg
aggggcattttgagtgtgggtggccccagggtcagtggaagtgttggatcccaaagtgaa
ggggaagaagaagggcactgcgagagggtgtctgggtcttccgctgtctcattcagagct
ccctcagaagaggtgacaccagcagaagagcaggactctgattctgagggtgatccagac
aaacccaacaagcatcgggcaaggcacgccaggctcaggcgcagcgagagtctatctgaa
aagcaggtgaaggaggccaaatccaaatgtaaacgtattgctctccttctcacggctgct
cggtccaacccaaacaacaagggggtgttgatgttcaagaagcatcggcagagggccaag
aaatacacacttgtgagctacggtacaggagaagacgaaccagaatacagcgacgaagaa
tacgaggaaaacgaagacaacaaacaagaaactcacactgttgaatttacccttgtggct
ccaaacgcttctgaaatagacaagcatttcctcactaatgcccatagtagcaaaggtgtg
ctaactatcaactgggacaagggtctccttgaaattgaaaggaacctgaacaaccaagca
gagatggaatgtttgcctgacaccaagggcaagggtgccgtaatgtttgcccaacggcgt
cagcggatggatgagattgctgctgaacatgaggagcttaggcgccaggggatcgccgtg
gaaggagtgcagattgctgataagaagatagaagagcactcctatatgcagtccagaaca
gaaggccatgcttacatggatgtaaatgtacaccaacaaagccaacaccaacaacagtac
cagcaatatcaggaacagcagtactatgagcaacaacagaactaccaacaacaacaacaa
caacaatatcagcaacaacagcagtatgaacaacagctttatcaacaacagcaaatgtat
cagaagcagcaagaatatcatcaagagcaacagcaaatgcagcactattctgcaaacatc
aatggaacagtccaacatgaaatgcagggttctctcaacaatcgtactgcacagcctttc
tcagtagaaaacatggcgacttccccttactctcccgcaatgagtggggtcaatcaagat
tctgtgggccaaggagagcagatagcttcccgggatgaacgcatttctactcctgcaagt
cgaactgggcttttgtcagactgcagaagacgaaatgctggcaagccaatgttcactttt
aaggaagcaccaaaagtatcaccaaacccagcactactaaacctcctcaacagaaatgac
aagaagttgggttttgagtcagggcctgaggaagactaccttagtcttggggctgaggct
tgtaatttcctgcagtctcaacgaaataaacaaaagaatcctccaccggtggctccaaag
cctgtgatcaaccccaactctcctccatggttcccaccgatagaagtgagcaaccaggac
atgcctcaacaagctgaaaatagtgtatccacacctgctgtagcccccaccacagagact
acacttgctccagaactagagccaaaccctgcacctgcctctgagccctctccccctcct
gccccccagaaagctcttgccagcgccaccacagaggaacagtgcccatgtactctcccg
gagcctgaatctcaacaacagcttctgcaagtgacagctcaggaaaatggtcatatgaat
tctatcctgcaacctgagcctgctccggtgactagctgggctcaagcacaaacacaacca
caacaacaggcatctaacaattcttggcatccagctcaagtgcagccccaggaaccacct
caaagtcagtccccaccacagccaccttgggtgacgcgtcatcctactcagacccaagca
ctgcctcaaacccccacaaataattggacccctcaaattcagccatcctggagtcagcat
caagagcaagcacaagcccagacacatgctcagccatcatggaacatgcgtcaagagcaa
cccaagtctcatccacaggcccagccaccctggacacattctcatgagcagccaaatctg
cagcaaatgcaaccaacttggggtcaacttcaagaaccaatgcagcagcagccccaggca
ccttgggcacagccatcacaaacagaacatcagcatcaaccaccatgggtgcaacccttg
caaaaatcccaagtgcaacctccttgggctcaacaggtccagccagaatcccagccacag
ccaccatgggttcagcaaccacagcatcaggctccacaacaagcatggccacaggcccag
gcaccaggtcagcctcaaacatcttgggtctcagttcagcctcaacagcaaccctcaaat
aatgcatggcctccatcacaaactcaagttcagccaccttggatccaagcagcccaagca
caacccccagcgccgcctcaagcaattttaaacccatggccaccagtacctgcccaggct
cagtcccaaccatcgtgggcccagcacccttcagaacatggtcagacaccaataaattct
tgggcccaagagcaaaaccaggcccaacagcaaccaccttgggctcaaccagttcctccc
cagcccacaccacagccaaactggcaacagtctacttcaaagactccaccacagccacca
atgaatgcatggcctccacctcaggcacaacctcagacacctgtggatgcctgggtacca
cagtcaaaaccaacccctgtgaatgtttccacgtcaatggtgaacactcgtccctctcca
aaaccttggcattcgccacaaaatgccccacaaaaccggacccctccgactccaccacag
cgaatgcactcttttaccattggtcaacgagcttcatcacctatcaacccaatggccacg
gtcttaaacccatcatcccaaggttcagcttttgagatgccagctgtcagagggaaagga
gctgatatgttcgccaagaggcagtctcgtatggagaaatttgttgtggactctgagact
gtgcaagcaaacaaggcaagccggtcaacatcaccagttgcttccttaccaaatgagtgg
aaatatacacccaacgtacgtgctcctccttcacgggcatataatcctattcagtcccct
tcttatcccccagcagcaacaaagcagccccctccaagtagccctttaaccaaagcaaag
acaaaagccaaagagaaacaaaaacctgctcctaaacccctcagtgttgtagatgttatg
aagcatcaaccctatcaactcaattcctcactttttacctttggcccagcaacagaggct
gccaacccccctgaacctaagcctgacatttcacctcctaacccacctgttgaaaaccaa
acaattacatatgagcaaatggcccccattcagccagttggaccctataacgtccccagc
ccccaatacccccagcaagcctatggaatgcccatgcagcctatcatgcatgatggccac
taccagcaaaacccagctaatatttatcctcaccccaacccatatcaacaaccccctggt
ggtccataccagcaggcatataaccaacagtttcagcaacctctcccacctgcttataat
ccccaagctcctcagtctccaaaccctacctaccaacaggcaccgcaggccccttaccca
ccagctaatagccctccctacctggcagctccctcagtaccttaccagccacagcctccc
agtagctatgttgttccttgttttcctgtagctgcaaggcctgaatctgtatctggtggc
aacactgtagctgctcctaaacctaagtttacagctaaaaagagctcagctcaggtgtgg
aaacctacagcagttgataaagagtga
DBGET
integrated database retrieval system
