Etheostoma spectabile (orangethroat darter): 116707338
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Entry
116707338 CDS
T08457
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04382
Cornified envelope formation
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116707338 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116707338 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116707338 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116707338 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116707338 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116707338 (col4a6)
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116707338 (col4a6)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116707338 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116707338
NCBI-ProteinID:
XP_032400558
LinkDB
All DBs
Position
19:11283891..11455200
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AA seq
1714 aa
AA seq
DB search
MKLLICVIAVALAAGSAHGGVGKSDEPCAGRDCGAGCRCNPEKGSRGRPGALGEVGQSGP
EGPRGGPGPTGPKGEKGHVGLKGPSGPKGDKGPMGVPGFQGNDGVPGHPGQGGSRGPPGL
DGCNGTRGEPGYPGFGNGEPGFPGITGPGGPKGQKGEPRFLSNGITGLPGPPGVDGFPGV
RGPDGPPGFTGPRGPEGFSGLPGPPGPPGPMGSRSDGYVGEKGDKGDVGLPGDPGQPLVN
GIVEFVGFPKGDKGMQGEPGQKGVRGITGNPGQPGLFGYRGELGEKGIPGYPGARGPPGF
NGPPGAPGQQGLRGTPGFSGQPGYIGPKGDQGDQGLPGPPVYVSDVGTLVQGPTGDPGLN
GLPGAPGDQGFPGYPGLPGQPGIVEFGTGRPGAPGFPGNSGPKGEKGNPGLQVFGPEGIP
GSPGPPGPPGPPGPPGFLGQSGSTIEPCVIYPEWPEGSPEGLPNNIPGVPGLPGPRGQPG
NKGFNGFRGDPGDCACIGGGTSGLPGPPGTNGDPGFAGRKGEPGDGGPPGFNGGPGPPGP
AGELGFSGRKGEKGASYYPNLGLGVKGELGDPGPRGPTGETGKPGRDGLPGFPGVPGPPG
DAGFGTVGEKGFPGFPGQKGRSGGPGEPGIGYPGLPGFRGEPGDPGIPGQPGQRGLPGLK
GENSCEGVNGAGEGTGSALPCTIPGEEGDPGVTGIPGRPGPKGQPGNLGGPGRPGFDGAK
GERGDPGFGGQPGPQGFPGPRGDPGVPGTPGQSFDGARGKDGAPGRPGAKGQTGEVLGAN
QGGPGRDGAPGIPGDKGQPGTPGQPGLPGSDGRFGVPGLKGERGVDGVPGLPGLPGLPGD
PTPGIPGRRGSPGISGPSGSPGCQGYPSRKGERGDPGFPGPAGMKGTPGLPGTNGSPGAR
GPPGPPGPGTREGIPGTQGRKGERGLSGLVGFPGVPGRPGSPGFPGGQGLAGGPGRDGRP
GGPGFPGLRGDRGDPGPPGQPFPFIPGNGDRKGEPGNPGANGLPGFPGPRGDKGLPGQPG
RPGLPGLPGYAAQSKGQPGDPGFPGRPGAPGFPGTKGEAGIMGFPGMSGPRGDDGVPGFP
GNPGEFGRPGGKGAPGESYGYPGAPGPKGQPGDSGFPGGRGYDGAPGDIGIPGSPGFPGV
KGTPGDRGRPGFMGSPGFPGPNGQSSYPGRRGADGPPGPPGGPGGPGAKGLPGSPGLDGL
NGLAGPKGLPGTPGGSAGGRPGASGVPGSKGERGDSYPGAPGFPGQKGERGNTGGPGLVG
FPGLPGPPGPTVVSDVPGPLGDPGLPGLDGEYGLQGPPGSPGPPGPGTTQGDRGDSGLPG
FPGSPGRKGDSGIPGGAGLPGSSGFKGARGDTGYSGGPGLNGFPGDPGYYGNKGAKGVQG
RPGRKGSPGVVSLPPRDIEKRYGDGGFPGAIGNTGVPGESGPPGMPGRPGPKGRPGPVGK
LGRTGSAGFPGPVGDAGPPGFLGPTGEQGPTGQAGRPGSPGGVGRSSSIGYTLVKHSQNS
QVPMCPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFNTIPFLYCSPNEICYYAS
RNDKSYWLSTTAPIPMMPVAEEQIQPYISRCSVCEAPSQPVAVHSQDVTIPTCPPGWRSL
WIGYSFLMHTAAGAEGGGQSLQSPGSCLEDFRATPFIECNGGKGTCHYFANKYSFWLTTV
DPRQEFLYSPAQETLKGGQERSKVSRCQVCSKIL
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcctgatttgtgtgatagcagtcgccttggccgcgggatctgcgcacggaggc
gtggggaagtctgacgagccgtgtgccggccgggactgcggcgcaggatgccggtgcaac
ccggagaaagggagcaggggtcgtccaggggctctcggtgaagtcggtcagagcggacca
gaggggccacgtgggggcccggggcctacagggcctaaaggagagaagggccatgttggc
ctaaaaggaccatctggccccaaaggggacaagggacctatgggagtgccggggttccag
ggaaatgacggagtacctggtcacccgggtcagggcgggagcagaggaccaccaggcctg
gacggatgtaacgggaccaggggagaacctggatatcccggctttgggaatggagaacct
ggattccctggaattactgggcctggcgggccaaagggtcagaaaggagagcctcggttc
ctctcaaacggcatcacgggtttaccgggtccaccaggagtggacggttttcctggggtc
agaggtcctgatggtccacctggttttaccggtccgagagggccggagggattctccggt
ctgcctggtccccccggccccccagggccaatggggagccgtagtgacggatatgtagga
gagaaaggagacaagggcgacgtgggattgcccggtgaccccggccagccattggtcaat
ggcatcgtggagtttgtgggttttcccaaaggagacaaaggaatgcagggtgagcctggc
cagaagggagtcagaggaatcactgggaatcctgggcaacctggactgttcggctatcgt
ggtgaactcggagagaaaggcattcctggataccccggggcaagaggtccccccggtttt
aacgggcctcctggagctccaggacaacagggattaagaggtactccaggtttctccggg
caaccaggatacataggacccaagggagaccagggtgaccaaggactaccgggacctccg
gtttacgtttctgatgtgggcactttagttcaaggaccaacaggtgacccgggtctcaac
ggcctgcccggggcccccggtgaccagggatttccaggatacccaggactaccgggccag
ccagggattgtagaatttggtacaggtcgtcccggagctcccggtttccccgggaacagc
ggcccaaagggagagaaaggaaacccaggtttacaagtgtttggccccgaaggaatcccc
ggctcccctggaccccccggcccccccggcccccccggccctcctggattcctgggccag
tctggatctaccattgaaccctgcgtcatctatcccgagtggcccgaaggttctcccgaa
ggtttacccaacaatattcctggagtgcctgggctgcctggccccagaggacagccgggt
aacaaaggattcaatggctttagaggtgatcctggcgactgtgcctgcataggagggggc
acctcagggttgcctggacccccaggaaccaacggcgaccccggctttgctggacgaaag
ggcgagcctggtgacggcggtccaccgggctttaatggcggtccgggacctcctggtccc
gctggtgagctcggtttctcgggacgtaagggagagaagggggcgtcttactaccccaat
ctgggtttgggggtgaaaggagagctcggagatcctggacccagaggaccgactggggaa
actggaaaaccaggcagagatggactgccgggcttccccggagtccctggacccccaggt
gacgctggcttcggcacagttggtgagaaaggtttcccagggttcccggggcaaaagggt
cgttccggtggccccggcgagcctggcatcggctaccccggcttgcctggctttcgcggt
gagcctggagaccctggtattcctggacaaccagggcaacggggtttacccggacttaaa
ggtgaaaacagctgtgaaggggttaatggcgccggagagggaacgggctcagctctacct
tgcaccatacccggggaggaaggagaccccggtgtcaccggtatacctggacgacctggt
cctaaaggtcaacccggtaacctaggaggccctggacgtcccgggttcgacggtgccaaa
ggagagagaggagaccctggttttggaggccaaccaggaccacaaggtttcccgggaccc
agaggtgatcctggagttccaggtactcccggacagagttttgacggagccagggggaag
gatggcgcccctgggcgtcctggagccaagggccagactggagaggtactgggagccaat
caaggtggcccaggacgggacggggcaccaggtatccctggagacaagggccagcccggg
acgccaggacaacctggattacctggtagtgacggacgtttcggtgttcctgggctgaag
ggggagcgcggagttgacggtgttcccggtctcccaggccttcccggtcttccgggtgat
ccgactcctggcattcccggtcggcgtggatctcctggcatcagcggaccaagcggatca
ccaggctgccaaggttaccccagtcgcaagggagagagaggagacccagggttcccagga
ccagctggaatgaagggaacaccaggactgcccggcaccaatggatcaccgggggccagg
ggacccccgggaccgccaggaccgggaactagagagggaatcccaggaacacaaggaagg
aagggtgagcgaggtttatccggactggtgggtttccctggagtgccgggacgtcctgga
agtccagggtttcctggaggccaaggactggctggagggcccggaagagacggacgcccc
ggcggtcccggattccccggactgagaggtgacagaggagaccccggtccccccggccag
ccctttccttttattccaggaaatggtgatagaaaaggagaaccaggaaaccccggagcg
aacggtcttcctggcttccccggacccagaggtgacaagggtctgccgggtcagcctggt
cgtcccggtctgcctggacttcctggttatgctgcacagagcaaaggacagccgggagac
ccggggttccccgggcgaccaggagcgccaggcttccctggaacgaagggagaagctgga
atcatgggattccccggcatgtctggaccaaggggtgatgatggcgtacctggttttccc
ggcaaccctggagaatttggtcggcctggtggcaaaggggcacccggtgaaagttacggt
tatcctggagctccaggacctaaaggccagccaggagattcaggtttcccaggtggccgt
ggctatgacggcgctcccggtgacatcggcattccaggaagtccaggtttccctggtgtg
aagggaactcctggtgatagaggacggcctggatttatgggctcccctggtttccccggg
cccaatggccagtccagctacccaggaagaagaggagcagatggacctcctggtccgcct
ggaggtcctggaggtcctggagccaaaggtttgcccggatcccctggtttggatggactt
aatggccttgctggacctaaaggcctccctggaaccccaggtgggagtgcaggcggtcgc
ccaggagcctctggtgttccagggtcgaagggagagagaggagactcgtatcccggagct
ccaggcttcccggggcagaagggagagagaggaaatacaggtggtcctggacttgtgggg
ttccctggtctgcccggacctcctggtcccactgtggtgtcggatgtccctggacctttg
ggagacccaggcctccctggactggacggagagtatggtttacaaggtcctccaggttct
cccgggcctcctggtccaggcacaacccagggagacagaggtgactctgggctcccgggc
ttccctggctcccccggcaggaaaggagactccggcatccctggaggcgccggactcccc
ggcagctccggtttcaaaggagcacgaggtgacactggctacagcggaggtcctggtctc
aatggtttccccggtgaccctggttactatggaaacaaaggagccaagggagtacaaggg
cgtcctgggcgtaagggtagccctggagtggtctcgctgcccccacgagacatcgagaaa
cgctatggagatgggggctttcccggtgcaattggcaacaccggtgtccccggagaatcc
ggaccgccaggaatgcccggacgtccaggtcccaaaggtcgtcctggtcccgtgggtaaa
cttggcaggactggatctgctggttttcccggacctgtcggcgacgccggaccccccggt
ttccttggacccactggagaacaaggtcccactggtcaggccggtcggcccggctctccc
ggcggcgtgggccgcagttccagcatcggctacactctggtgaagcacagccagaactcc
caggttcccatgtgtcctcagggcatggccaagctgtgggacgggtacagtctgctctac
gtcgagggacaggagaaggctcacaaccaggacctcggtcagccggggtcgtgcctcccc
aggttcaacaccatccccttcctctactgctccccaaacgagatctgctactacgccagc
cgcaacgacaaatcctactggctctccaccactgcccccatacccatgatgcctgtggcc
gaggagcagattcagccttacatcagcaggtgttctgtgtgtgaggctccctctcagcct
gtggcggtccacagtcaggacgtgaccatccccacctgtccccccggctggaggagtctc
tggataggatactccttcctcatgcacacagcggccggcgccgagggcggcgggcagtcc
ctgcagtcccccggctcctgcctggaggacttccgcgcgacgccgttcatcgagtgcaac
gggggaaagggcacctgccactacttcgccaacaagtacagcttctggctcaccaccgtg
gacccccgccaggagttcctttattccccagcacaggagaccctgaagggaggccaggag
cgctccaaagtcagccgctgccaagtctgcagcaagatcttgtag
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