Eubacterium siraeum V10Sc8a: ES1_24320
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Entry
ES1_24320 CDS
T02589
Name
(GenBank) conserved hypothetical protein YmdA/YtgF
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
esr
Eubacterium siraeum V10Sc8a
Pathway
esr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ES1_24320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esr03019
]
ES1_24320
Messenger RNA biogenesis [BR:
esr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ES1_24320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
ATP-synt_B
BTBD16_C
KH_2
V-ATPase_G_2
Phage_holin_3_6
DUF4407
LapA_dom
Motif
Other DBs
NCBI-ProteinID:
CBL35245
UniProt:
D4MNB2
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All DBs
Position
2609471..2611069
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AA seq
532 aa
AA seq
DB search
MEVWLAVTLCAAAFVVGAAIFGFVMYKMGIEHRKKTAEAQIESAEKEASRIVSEANEKAQ
ATKKTALVEAKDEIFKLKENNEKEIQKLKSETERELKERRAEVTRSERRLQQKEENLDKK
NDKIERLEEQLQNKNKKAEEKLAEAESIKKSQMDILEKISGFTLDQAKEHLLSMLDSELS
HEKAVKITAYEQRLKDECDEKARQYISLAISRLAADTVSEVAVSVVPLPNDEMKGRIIGR
EGRNIRALEQLTGVDLIIDDTPEAITLSCHDHVRREIARIALEKLIQDGRIHPTRIEETV
EKARREVELKIKQEGERAVMETNVNGLHHELVRLIGRLYYRTSYRQNVLNHSIEVAHLAG
IMASELGVDATLARRAGLLHDIGKALNHEIEGSHVQIGVDVCRKYKESPEVIHAIEAHHG
DVEIHSVIAALVQAADAISAARPAARSENYENYIKRLQKLEEICSSYNGVEKSFAIQAGR
EVRIMIKPEQVDDDKMIVLAREISQRIENEMEYPGQIKVHLIRESRAIDYAK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgtggcttgcagttacactctgtgcggcggcattcgtagtcggagcggcgata
ttcggttttgttatgtacaaaatgggtatcgagcatagaaaaaagacggcagaagcgcag
atagaatctgccgagaaggaagcaagcaggatagtatccgaggctaacgaaaaagctcag
gcaacaaagaaaaccgcactggttgaggctaaagacgagatctttaagctcaaagaaaac
aacgaaaaagaaattcagaaactcaaaagcgaaaccgaaagagaactcaaggaacgcaga
gcagaggtaacacgctctgaaagaagacttcagcagaaagaggagaacctcgacaagaag
aacgataagatcgaacgtcttgaagaacagctccagaacaagaacaagaaggctgaagaa
aagctggctgaagccgaatccatcaagaaaagccagatggatattcttgaaaaaatatcc
ggctttactttagatcaggcgaaggaacacctgctgagtatgcttgacagcgagctttcg
cacgaaaaggctgtcaagattacagcttacgaacagcgtcttaaggacgaatgtgacgaa
aaggcaagacagtatatctcccttgctatttcaagacttgccgcagataccgtatcagag
gtggcagtatccgtagtgcctctgcccaatgacgaaatgaagggcagaataatcggccgt
gagggcagaaacatccgtgcgcttgaacagctcacaggtgttgaccttatcattgacgat
acccccgaggctataacgctttcctgccatgaccatgtaagacgtgagatagcaagaata
gcgcttgaaaaactcattcaggacggacgtatccatcccacgagaattgaagaaacagta
gaaaaggcaagacgtgaggtcgagcttaaaatcaagcaggagggcgagcgtgccgttatg
gaaaccaacgtcaacggcctgcaccacgagcttgtaaggcttatcggccgcctttactac
cgtacctcttaccgtcagaacgtacttaaccactcaatagaggtcgctcaccttgcaggc
ataatggcaagcgagcttggcgttgacgcaactcttgcaagaagagcaggtcttctgcac
gatataggcaaggctcttaaccacgagattgaaggctcacacgttcagataggtgtcgat
gtctgccgtaagtataaggaaagcccagaagtcatccacgctatcgaggctcaccacggc
gatgttgagatacactctgttattgccgctcttgtacaggcagccgacgcaataagcgcc
gcacgtcccgccgcaagaagcgaaaactacgaaaactacatcaagcgtctgcaaaagctc
gaagagatatgcagctcttacaacggtgttgagaagtcattcgctattcaggcaggccgt
gaagtaagaatcatgataaagcccgaacaggttgacgatgacaagatgatagttcttgca
agagaaatttctcagcgtatcgagaacgagatggaatatcccggtcagataaaggtacat
ctgataagagaaagcagagctatagattacgcaaaataa
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