Echinicola strongylocentroti: DN752_22080
Help
Entry
DN752_22080 CDS
T05506
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
est
Echinicola strongylocentroti
Pathway
est03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
est00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DN752_22080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
est03019
]
DN752_22080
03009 Ribosome biogenesis [BR:
est03009
]
DN752_22080
Enzymes [BR:
est01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DN752_22080
Messenger RNA biogenesis [BR:
est03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DN752_22080
Ribosome biogenesis [BR:
est03009
]
Prokaryotic type
rRNA helicases
DN752_22080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Mnd1
Motif
Other DBs
NCBI-ProteinID:
AWW32618
UniProt:
A0A2Z4IPP3
LinkDB
All DBs
Position
complement(5555471..5557165)
Genome browser
AA seq
564 aa
AA seq
DB search
MENEILFADLGISAEILQAVEGMGYTQPSEIQAQSIPLMLDGRDVIGQAQTGTGKTASFG
IPIVDRVDNTSKQPQALILCPTRELAVQVEGEITKLAKHKKGVFSTAIYGGEAIDRQIRT
LRKGVQIVVGTPGRIMDHMNRGTLKLDSVKTIVLDEADEMLDMGFREDIETVLSQMPEDR
QTIFFSATMAKPIMDLTKKYQINPEIVKITRKELTVENISQVYYEVKPPLKMELITRLIN
VHQFNLGVVFCNTKRATDEVTEGLIARGITAEALHGDLSQAQRDKVMNKFRKGLCTVLVA
TDVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFITGRKDIFRLKDL
EKYIKTSLTKMNPPSVAEMIDQKKDQLGKEVTTELSKEEDNQVFEAALGQLLAEGLTMDQ
IALGLVKLQMGKSIQELSDMNFDLNLGKDRDRGGRGKDRFERGRKGRGADRPGGRKGGRE
KGRREANMSRLFLNLGKKDRIRPNDIVGAIAGEAGISGRQIGGIDIFDNFSFVDVPTKDA
SHVINVMKRNTIKGKPVNMELSKD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaattttattcgcagacctgggaatttcagctgaaattcttcaggcagtg
gaaggcatgggctatacccaaccttcagaaattcaagcacaatcaatcccattaatgcta
gatggccgcgatgtcatcggtcaagcacaaacaggaacagggaaaaccgcttcctttggg
attcccattgtagatcgtgtagacaacacgagcaaacagcctcaagcattgatcctatgt
cctacaagggaattggccgttcaggtcgaaggagaaatcaccaaacttgcaaagcacaaa
aaaggtgtattcagcacggccatctacggtggtgaagccattgatcgtcagatcagaacc
cttagaaaaggcgttcagatcgtagtcggtacacctggtagaatcatggaccacatgaat
cgtggcaccctgaaattggactcagtgaaaactatcgtcttggatgaagctgacgaaatg
ctcgacatgggctttagagaagacatcgaaacggttctaagccaaatgcccgaggatcgt
caaaccatcttcttctctgctaccatggccaagcctatcatggacctgaccaaaaagtat
cagataaatcctgaaattgtcaaaataacacgtaaggagctgacagtagagaatatatcg
caggtttattacgaagtgaagccaccattgaagatggaattgatcacgaggttgatcaat
gttcaccagtttaaccttggcgtagttttctgtaacaccaaaagagctaccgatgaggta
accgaaggcttgatcgcccgaggaattacagctgaagcacttcacggtgacctttcacag
gcacaacgtgacaaggtaatgaacaaattccgtaaaggactttgtaccgtattggtagcg
accgacgtggcagcacggggtattgatgtagataatgtagaagtagtgttcaactacgac
ctcccactcgatgaggaatattacgttcaccgaatagggagaacaggaagagcaggtcgt
tctggaatggccatttcctttatcacaggaagaaaagacatattcaggctaaaagacctt
gaaaagtacatcaagacttccttgaccaaaatgaacccgccatctgtagcggagatgatc
gaccaaaagaaagatcaacttggaaaagaggtgactacggagctgtccaaagaagaagat
aaccaagtcttcgaagcagctttggggcaattacttgccgaaggattgaccatggaccaa
atagcacttggcttggtcaagcttcaaatgggcaaatccatccaggaactttcggatatg
aactttgaccttaacttgggcaaagacagagacagaggaggaagaggtaaagaccggttc
gaaagaggaagaaaaggccgtggcgcagaccgtccaggaggcagaaaaggtggtagagaa
aaaggacgacgtgaagccaatatgtctcgacttttccttaatcttggcaaaaaagacagg
atccgtccaaatgatatcgttggtgccatagctggtgaagcgggtatttctggtcgtcag
atcggtggtattgatatctttgacaacttctcttttgtagatgtaccgacaaaggatgcc
agtcacgtaatcaatgtaatgaagagaaacaccatcaaaggcaaacctgtcaacatggaa
ctttctaaagattaa
DBGET
integrated database retrieval system
