Empedobacter stercoris: HNV03_00125
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Entry
HNV03_00125 CDS
T06804
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
este
Empedobacter stercoris
Pathway
este03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
este00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HNV03_00125 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
este03021
]
HNV03_00125 (rpoC)
03400 DNA repair and recombination proteins [BR:
este03400
]
HNV03_00125 (rpoC)
Enzymes [BR:
este01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HNV03_00125 (rpoC)
Transcription machinery [BR:
este03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HNV03_00125 (rpoC)
DNA repair and recombination proteins [BR:
este03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HNV03_00125 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QNT13211
LinkDB
All DBs
Position
22654..26931
Genome browser
AA seq
1425 aa
AA seq
DB search
MSTKNKTSQFSKIRIGLASPESILQESKGEVLKPETINYRTHKPERDGLFCERIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYI
LGLPSKKLDMVIYYERYVVIQPGIAKGPEGEELNRLDFLSEEEYLDILETLPIENQYLED
SDPNKFVAKMGAEALEDLLSRINLDELSYELRHKAHNETSKQRRTEALKRLQVVEALRES
NMHHVNRPEWMVMRVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIK
APEVILRNEKRMLQEAVDSLFDNTRKASAVKADGNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPTLKLHECGLPKDMAAELYKPFVVRKLIERGIVKTVKSAKKIIDRKEP
VVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDGDQM
AVHLPLGPEAVLEAQLLMLASQNILNPANGSPITVPSQDMVLGLYYMTKIRRTDHQFTVK
GEGLTFYSDEEVQIAYNEGAVDLNAPIRVKGTIRVGEELVENQLIETSVGRVLFNQIVPK
QVGFVNEVLTKKSLRTIINKIIKITDFPTTAAFLDDMKALGYRNAFEGGLSFSLGDILIP
EQKKDLISGAINQVENIKMNYNMGLITNNERYNQVIDVWTTTNATLTEIVMKRMTEDQQG
FNSVFMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGGDIIENPIISNFREGLSILEY
FISSHGARKGLADTALKTADAGYLTRRLVDVAQDVIVMHEDCGTLRGLEISALKKKEEII
ESLSSRVLGRTSLNDIYNPDNGELIIAAGHIITEDIGEVLEAAGIENVEVRSPLTCEAKT
GICAKCYGRNLATGKEVQKGESVGVVAAQSIGEPGTQLTLRTFHVGGTAGNVSEQNTINA
KVDGTVEFDDLRLVQSTDDAGNLVDTVVSRSTEMKVIDDLGNVRQQTNIAYGTVLSVKNG
AKVQKGQEIASWDPYNGVIIAESTGKIEYEQLEQGVTFQIEIDEQTGFQEKVISESRNKK
LVPALRVITIDGEEKTYNLPVGAHLMVNDGEKINAGKILVKIPRKSAKSGDITGGLPRIT
ELLEARNPSNPSVVCEMDGVVSFGKIKRGNREIIVESKNGEIRRYLVKLSAQILVQENDF
VRAGEPLSDGAITPEDILRILGPTAVQEYLVNEIQDVYRLQGVKIDDKHFEIIVRQMLRK
VRIVDSGDTRFLEDSLEHKDDFMEENDRLFGMKVVEDAGDSDTLKPGQIISVRDLRDENS
KLKREDKNLVTAREALPATAEAVLQGITRASLQTKSFMSAASFQETTKVLNEAAVAGKVD
GLVGLKENVIVGHLIPAGTGLKEYQNIIVGSNREYEELINAKQEL
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaaaaaataaaacaagtcaattctcaaaaatccgtatcgggttagcttctcca
gaatcgattctacaagaatctaaaggtgaagttttaaaacctgaaacgattaactataga
acgcacaaaccagagcgtgacgggttattctgtgagcgtatctttggacctgtaaaagat
tacgaatgtgcctgcggaaaatataaaagaatccgttataaaggtatcgtttgtgaccgt
tgtggggttgaagttactgaaaagaaagttcgtcgtgagcgtattggacacatcaacctt
gttgtgccaattgcacatatttggtatttccgttcattaccaaacaaaattggttacatc
ttaggattaccatctaagaaattagatatggtaatttactacgaaagatatgtcgtaatt
caaccaggtatcgcaaaaggaccagaaggggaagaattaaatagattagatttcttatca
gaagaagagtatttagatattttagaaactcttccaatcgagaatcaatatttagaagat
tcagatcctaataaattcgttgcgaaaatgggtgctgaagcattagaagacctattatct
cgtatcaatttagatgaattatcttacgaattaagacacaaagcacataacgaaacatct
aaacaacgtcgtacagaagcgttaaaacgtttacaagttgttgaggcgttacgtgagtca
aatatgcaccacgtcaatcgtcctgaatggatggtaatgcgcgttattccggttattcca
ccagaattacgtccattagttccattagatggtggtcgttttgcaacatcagatttaaat
gatttataccgtcgtgtaattatccgtaacaatcgtttgaaacgattaatggagattaaa
gcgccagaagtaattttacgtaacgaaaaacgtatgttacaagaagcggttgattcatta
ttcgataatacgcgtaaagcatctgctgttaaagctgatggtaaccgtccattaaaatca
ttatctgattcattaaaaggtaaacaaggtcgtttccgtcaaaacttattaggtaaacgt
gtggattattctgctcgttctgtaattgttgttggaccaacactaaaattacacgaatgt
ggtttaccaaaagatatggcagctgaattatacaagccattcgtagttcgtaaattaatc
gagcgtggaattgtaaaaacagttaaatcggctaagaaaattatcgatagaaaagagcca
gttgtttgggatattttagaaaatgtaatcaaaggacacccagttttattaaaccgtgcc
cctacgttacaccgtttaggtatccaagcattccaaccgaaattaattgagggtaaagca
attcgtttacacccattagtgtgtactgccttcaatgccgatttcgatggtgaccagatg
gccgttcacttaccattaggaccagaagctgttttagaagcacaattattaatgttggct
tctcaaaatatcttgaatcctgcaaatggatctccaattactgttccttctcaggatatg
gtattgggtctgtactatatgacgaaaattcgtcgtactgaccaccaatttacagtaaaa
ggtgaaggattaactttctattcagacgaagaagttcaaattgcatacaacgaaggagct
gttgacttaaacgcgccaattcgtgtaaaaggaactattcgtgtaggagaggagttagta
gaaaatcaattaatcgaaacttcagtaggacgtgtgttatttaaccaaatcgttccaaaa
caagtaggatttgtaaatgaagtattaacgaaaaaatcgttacgtacgatcattaacaaa
atcatcaagattacagatttccctacaacggctgctttcttagatgatatgaaagcatta
ggataccgcaatgccttcgagggtggtttatcattctcattaggagatatcttaatccca
gaacaaaagaaagaccttatctcaggtgcgatcaaccaagttgagaacattaagatgaac
tataacatgggtcttattacaaataacgaacgttacaaccaagttattgatgtttggaca
acaacaaacgcaacgttaactgaaattgtaatgaaacgtatgacagaagatcaacaagga
tttaactctgtattcatgatgcttgattcaggagcacgtggatcgaaagagcaaattcgt
cagttatcaggtatgcgtggattgatggctaaacctcaaaaagctggttctactggtggg
gatatcatcgaaaacccaattatctctaacttccgtgaaggtctgtctatcttagagtac
tttatttcttcgcacggtgcgcgtaaaggtcttgccgatactgccttaaaaactgccgat
gctggatacttgactcgtcgtttggttgacgttgcgcaagacgttatcgttatgcacgaa
gactgtggtacattaagaggtttagaaatttcagcacttaagaaaaaagaagaaattatc
gaaagtctttcttctcgtgtattaggccgtacttcgttaaatgatatttataatccagat
aacggtgagttaatcattgctgctggtcatattatcacagaagatatcggtgaagtttta
gaagctgctggtatcgaaaacgtagaagttcgttctccattaacatgtgaagcaaaaact
ggaatttgtgcgaaatgttacggacgtaacttagcaacaggtaaagaagttcaaaaaggt
gaatctgtaggtgtagttgctgcacaatctattggtgagcctggtacacagttaacatta
cgtacgttccacgtgggaggtactgctggtaacgtttctgaacaaaatacaattaatgca
aaagttgatggtactgttgagtttgatgacttacgtttagtgcaatctactgatgatgca
ggaaaccttgtagatacagttgtttctcgttctacagagatgaaagttattgacgattta
ggaaacgttcgccaacaaactaacatcgcttacggtacagttttatcagtgaaaaatgga
gctaaagttcaaaaaggtcaagagattgcaagctgggacccttataacggggtaatcatc
gcagaatctactggtaaaatcgagtatgaacaattagaacaaggggtaaccttccaaatt
gaaatcgatgagcaaactggattccaagaaaaagttatttctgaatcacgtaataaaaaa
ttagttccagcgttaagagttatcacaattgatggtgaagaaaaaacatacaacttacca
gtaggtgcacacttaatggtaaatgatggagaaaaaattaatgcaggtaaaatcttagtt
aagatccctcgtaagtcggctaaatctggcgatattacaggaggtttacctcgtattaca
gagttgttagaagctcgtaacccatctaacccatcagttgtttgtgaaatggatggagtt
gtatctttcggtaaaattaaacgtggtaaccgcgaaatcatcgttgaatctaaaaatggt
gaaatccgtcgttacttagttaaattatctgctcaaatcttagttcaagaaaatgacttc
gtacgtgcaggtgagcctttatcagatggagcaattacaccagaagatattttaagaatc
ttaggaccaacagcggttcaagaatacttagtaaacgagattcaagatgtataccgttta
caaggggtgaaaattgatgacaaacacttcgagattatcgtacgccaaatgttacgtaaa
gttcgtattgttgattcaggagacacaagattcttagaagatagtttagagcataaagac
gatttcatggaagaaaacgatcgcttatttggaatgaaagtcgtagaagatgcaggagat
tctgatacattaaaaccaggtcaaatcatctcagttcgtgatctacgtgatgaaaactct
aaattaaaacgtgaagataaaaacttagtaacagcacgtgaagctttacctgcaacagca
gaagcagttttacaaggtattacaagagcatctttacaaactaaatctttcatgtctgcg
gcatcgttccaggaaacaacaaaagttcttaacgaagcagctgtagctggtaaagtagac
ggtttagtaggattgaaagaaaacgttatcgttggacacttaattcctgcaggaactgga
ttaaaagagtatcaaaacattatcgtaggatctaaccgtgaatacgaggaattaataaac
gcaaaacaagaattataa
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