Empedobacter stercoris: HNV03_03565
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Entry
HNV03_03565 CDS
T06804
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
este
Empedobacter stercoris
Pathway
este03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
este00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNV03_03565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
este03019
]
HNV03_03565
03009 Ribosome biogenesis [BR:
este03009
]
HNV03_03565
Enzymes [BR:
este01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNV03_03565
Messenger RNA biogenesis [BR:
este03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNV03_03565
Ribosome biogenesis [BR:
este03009
]
Prokaryotic type
rRNA helicases
HNV03_03565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QNT13808
UniProt:
A0A9Q6Y6L7
LinkDB
All DBs
Position
735880..737769
Genome browser
AA seq
629 aa
AA seq
DB search
MITFKELGLQEELLTAIEKMGFVNPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLP
ILNQLDNSSKSVQAIILCPTRELCLQIAKEIETFAADTRGVRVQAVYGGADIVKQIRGLK
DNPQIVVGTPGRTMDLIKRGALKINDITWTVLDEADEMLNMGFRDEIDSILETTPEEKQT
LLFSATMPSEVRRIASEYMHNPVEIAVSKVNTTSKNIEHHVYLVRSSDRYLALKRLADYY
PNIYGIVFCRTRREAKDVADKLMQDGYNADALHGDLSQSQRDHVMEKFRNQNIQILVATD
VAARGIDVNELTHVINFNLPDDPEVYVHRSGRTGRAGNKGISIIISGGREARKIRDLEKL
IASKIEPKNVPTGAEICEKRLISLIDKIENIEVDDELIEPYMETVNEKLADIDRDTLLKR
FLTVEFNSFLEYYKNTKDITPEGDRGDRSDRSSNRRGGRDFSRFFINIGQKHNLRVPNLI
GLINEQTRNRNIEIGKIEILRNFSFFEVDTQFESLVLESFKDAQRDGVDLDVQISKPEPR
RGDGERRGGGDRRRNGGGDSRGRGFNSRRDSDRERSGGDRGGFRGGDRDRGGYRGGDRDR
DSRDSKGGDRGGYRGGDRNRTGSSRRGRD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgattacattcaaagaattaggacttcaagaagaactcctaactgcaattgagaaaatg
ggcttcgttaacccttctccaattcaagaaaaagctattcctcaaatcctttcatcagac
caagatgttattgcattggcgcaaacaggtacaggaaaaactgcagcattcgggcttccg
attttaaatcaattagacaatagttcaaaatcagttcaggcaattattttatgtccaact
cgtgagttatgtttacaaatagcaaaagaaatcgaaacttttgcagctgatacacgagga
gtacgtgtacaagcagtttacggtggagctgatatcgttaaacaaattagaggattaaaa
gataatccacaaatcgttgtaggaacaccaggtcgtacaatggatttaattaaacgtggt
gcattaaaaattaatgacattacgtggacagttttagatgaagctgatgagatgttgaac
atgggattccgtgacgaaattgattcaattttagaaactactccagaagaaaaacaaact
ttattgttctcagctacaatgccttcagaggttcgtcgtatcgcttcagaatatatgcac
aatccagttgagattgctgttagtaaagtaaatactacctcaaaaaatatcgagcaccac
gtttatttagtacgttcatcagatcgttacttagctttaaaacgtttggccgattattac
ccaaatatttatggtatcgttttctgtagaacacgtcgcgaagcgaaagatgtagcagat
aaattgatgcaagatggttataatgcagatgcattacacggagatttatcacaatcacaa
cgtgatcacgtgatggaaaaattccgtaaccaaaacattcaaattcttgtagcaacagac
gttgcagctcgtggaattgatgttaatgagttgacacatgttatcaacttcaacttacca
gatgatccagaagtttatgttcaccgttcaggtcgtacaggtcgtgcaggaaacaaagga
atatctattattatttcaggtggacgtgaagcacgtaaaattagagatttagaaaaatta
attgcttctaaaatcgagcctaaaaacgttccaactggtgcagaaatttgtgaaaaacgt
ttaatttctttaattgacaaaatcgaaaatatcgaagttgatgatgagttaatcgagcct
tacatggaaactgtaaacgaaaaattagctgatattgatcgtgatactttattgaaacgt
ttcttaacagtagaatttaattcgttcttagaatattacaaaaatacgaaagacatcact
ccagaaggtgatcgtggtgatagaagtgatcgttcttctaatcgtcgtggaggtcgtgat
ttctcaagattcttcattaacattggacaaaaacacaacttacgtgttccaaacttaatt
ggattaatcaacgaacaaacacgtaaccgtaacatcgaaatcggaaaaattgaaatttta
cgtaatttctctttcttcgaagtagatacacaattcgaatcattagttttagaatctttc
aaagatgcacaacgtgatggagttgatttagatgttcaaatctctaaaccagaaccaaga
cgtggtgacggtgagcgtcgtggaggcggagatcgtcgtcgtaatggcggaggagattct
cgtggacgtggttttaacagtcgtcgtgactctgatcgtgaaagaagcggtggagaccgt
ggtggtttccgtggaggagatcgcgatagaggaggttaccgaggaggagaccgtgatcgt
gatagccgtgacagtaaaggaggagatcgtggtggttaccgcggtggagaccgtaacaga
acgggaagttcaagaagaggtagagattaa
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