Empedobacter stercoris: HNV03_05145
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Entry
HNV03_05145 CDS
T06804
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
este
Empedobacter stercoris
Pathway
este03420
Nucleotide excision repair
este03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
este00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNV03_05145
03430 Mismatch repair
HNV03_05145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
este03400
]
HNV03_05145
Enzymes [BR:
este01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNV03_05145
DNA repair and recombination proteins [BR:
este03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNV03_05145
MMR (mismatch excision repair)
Other MMR factors
HNV03_05145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
ResIII
DUF1840
AAA_11
DEAD
Meiotic_rec114
CarD_TRCF_RID
UCH
DUF3015
Motif
Other DBs
NCBI-ProteinID:
QNT14089
LinkDB
All DBs
Position
complement(1061545..1063884)
Genome browser
AA seq
779 aa
AA seq
DB search
MEQNYLEKLNEPQRLAVEATEGPVMVIAGAGSGKTRVLTYRIAHLLNKGVDAFNILSLTF
TNKAAREMKERIGQVVGESNAKSLWMGTFHSVFARILRVEAPLLGYPSDFTIYDQQDAVS
VMTKIINELHLDKDIYKPKQVLGRISQYKNNLITVRAYHNNQALMEADNEAMRPRMGDIY
RAYVDRCFKSGAMDFDDLLLRTNEILTRFPEVLAKYQERFKYIMVDEYQDTNHSQYLIVK
ALASRYENLCVVGDDAQSIYAFRGANIRNILSFKSDYPDAKMYPLEQNYRSTQMIVEAAN
QIIKQNQDQLEKNVWTANETGEKIAIYRGLSDADEARFIATQIWERQINEHLQPKDFAIL
YRTNAQSRALEEALRKKGIKYRVYGGTSFYQRKEIKDMVGYMRLLINQNDEEALLRTINY
PARGIGQTTISKLLVAADQHQMSLFSLIENIAMYAPTIGINAGTSNKLNDFVLMIKRFQV
MLKSHDVYEVTMEMAKTTQLLNALKEDSTPEGVSRLENVQELLNSIQGYVEEQQQLDEGD
ASLGGFLENIALATDADNEEDDDNKVNLMTVHLAKGLEFPVVFIAGLEENLFPSMMSVNT
RAELEEERRLFYVALTRAEKVAYMTYSVSRFRWGKIIDCEPSRFLEEIDDRFLEWKNLHI
SARASNNSGLSADLFGDEPTPQPYQQREKSVARQNPRARVESAQPRANFKPVNQTKSSGT
SPANAQGLQIGQVVVHDRFGRGVVKDLQGEPSDMKAIIHFDNAGEKKLLLNFAKLKVIR
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaattatttagaaaaactaaacgaaccgcagcgattagctgtagaagcaact
gaaggtcctgtaatggttattgcaggtgcaggttctggaaaaacaagagttttaacctat
cgaattgctcatttattaaacaaaggtgttgatgcgtttaatattttatcattaaccttt
accaataaggcagcacgtgaaatgaaagaacgtattggacaagttgtaggagaatcaaat
gccaagtcgctttggatgggtacctttcactctgtttttgcaagaattcttcgtgtagaa
gcaccattattaggttatccatcagattttacaatttacgatcaacaagatgctgtttcg
gtaatgacaaagattattaacgaattgcatttagataaagatatttataaaccaaaacaa
gttttaggacgtatttcacaatacaaaaataacttgattacggtaagagcatatcacaac
aatcaagcattaatggaagcagataacgaagcaatgcgacctcgaatgggtgatatttac
agagcgtatgtcgaccgatgtttcaaatctggcgcaatggattttgacgatttattgttg
cgtaccaacgaaattttgacgcgttttccagaagttttagcaaaatatcaagaacgtttt
aaatatataatggtggatgagtaccaagatactaatcattcgcaatatttgattgtaaaa
gcattagcatctcgttatgaaaacctatgtgtagttggcgatgacgctcaatcaatttat
gctttccgtggtgctaacattcgaaatatattatcctttaaatctgattatccagatgcg
aaaatgtatccgttggaacagaattatcgatctacacaaatgattgtcgaagcggcgaat
caaattattaaacagaatcaagaccaattagagaaaaacgtttggactgcaaacgaaact
ggagaaaaaattgccatttatagaggtctttcagatgcggatgaagctcgttttattgcg
actcaaatctgggaaagacaaatcaatgagcatttacagccgaaagattttgctatttta
tatcgtactaatgcgcaatctcgtgctttagaagaagctttacgaaagaaaggaattaag
taccgtgtttatggaggaacttctttctatcagcgtaaagagattaaagatatggttggc
tatatgcgactattgatcaatcagaatgatgaagaagctttattacgtacaattaattat
cctgcaagaggtattggtcaaacgacgatttctaaacttttagtggcagctgatcaacat
caaatgagtttattttcattaattgaaaatatagcgatgtatgcgccaacgattggtatt
aatgctggaacatccaataaattaaatgattttgtgttgatgattaaacgtttccaagtc
atgttaaaatcacatgacgtttacgaagtaacaatggaaatggcgaaaacaacacaatta
ttgaatgcactaaaagaagattcaacgccagaaggtgtttcgcgtttagaaaacgtgcaa
gaattattaaactctattcaaggatatgttgaagaacaacaacaattagacgaaggagat
gcatcattaggaggttttttagaaaacattgctttagcaaccgatgcagataacgaagaa
gacgatgataacaaagtaaatttgatgactgttcacttagcaaaaggtttagaatttcct
gtcgtttttattgctggactagaagaaaacctttttccttctatgatgagtgtgaacacg
cgtgctgaattggaagaagaacgtcgattattttatgttgctttaacacgagcggagaaa
gttgcatatatgacctattccgtttctcgttttcgatggggaaaaattattgattgcgaa
ccatctcgtttcttagaagaaattgatgatcgtttcttagaatggaaaaatttacatatt
tctgcaagagcaagtaacaatagtggtttatccgcagatctttttggtgacgaaccaaca
cctcaaccctatcaacaaagagaaaaatctgtggcaagacaaaatccacgtgcaagggtt
gaatctgcacagcctcgtgcaaatttcaaacctgtaaatcaaactaaaagtagcggaact
tcacctgctaacgcacaaggtctacaaattggacaagtcgttgttcacgatcgatttggg
cgtggagtcgtaaaagatttacaaggtgaaccttcggatatgaaagcaattatacatttt
gataatgctggagaaaagaaattgcttttaaatttcgctaagctaaaagtaattcgataa
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