Empedobacter stercoris: HNV03_08475
Help
Entry
HNV03_08475 CDS
T06804
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
este
Empedobacter stercoris
Pathway
este03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
este00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNV03_08475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
este03019
]
HNV03_08475
Enzymes [BR:
este01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNV03_08475
Messenger RNA biogenesis [BR:
este03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNV03_08475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
HEM4
CMS1
Flavi_DEAD
P-loop_SecA
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QNT14689
LinkDB
All DBs
Position
1755997..1757229
Genome browser
AA seq
410 aa
AA seq
DB search
MKFTELNIIEPILKAIEEAGYTEPTEIQEQSIPLVLEGNDIIGCAQTGTGKTASFAIPIL
QNLTNTPSKGRKVRTLILTPTRELAIQINDSFKLYGKHLPLKHIAIFGGVNQNPQIGAIK
NGVDILIATPGRLLDLIGQGHLKINQIEIFVLDEADRMLDMGFVHEIKKIIEIIPKQRQT
LFFSATMPKSIRKFSHTVLNRPKEVSVTPVSSTAETVEQFVYHVDKDMKVKLLVNILNEH
PEERTLIFTRTKHGANRLVRHLEKAGIPSAAIHGDKSQNARQKALNNFKEEKLKVLIATD
IAARGIDIDQLPYVINYELPNVPETYVHRIGRTGRAGREGKAISLCAADERGDLANIEKL
IGNYVTIIKTPKEFYKLPDANSNNNFKKTNTGFKPKKDTKPKNPHRGRRK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcactgaattaaatataatcgaaccaattttaaaagcaattgaagaagctggt
tatacagaaccgaccgaaattcaagagcagtctattccacttgtcttagaaggaaacgat
attattggttgcgcacaaacaggaacaggaaaaacagcttcgtttgcaattcctattcta
caaaacttaacgaatacaccaagtaagggacgaaaagttagaacattaattttaacacct
actcgtgaattagcgattcaaatcaatgatagttttaagttatatggtaaacatttaccc
ttaaaacatatcgctatttttggaggagtaaatcaaaatccacaaatcggtgccataaaa
aatggtgttgatattttaattgccacacctggtcgtttattagatttgattgggcaagga
catcttaaaatcaatcaaattgaaatttttgttttagatgaagctgaccgtatgttagac
atgggatttgttcatgagatcaaaaagattatcgaaattattccaaaacaaagacaaacc
ttatttttctcggctacaatgccaaaatctattcgtaagttttctcacactgttttaaat
cgtcctaaagaagtaagtgttacacctgtttcttcgactgctgaaacggttgaacagttt
gtttaccatgtagacaaggacatgaaagtaaaacttttggtcaatatcttaaatgaacat
cctgaagagcgtacattaatctttacgcgtacaaaacatggagcaaatcgtttggttaga
catttggaaaaagctggaattccttcggctgctattcacggagataaatctcaaaatgca
cgtcaaaaagctttgaataatttcaaagaagaaaagttaaaagtacttattgctactgat
attgccgctcgtggaatcgatattgatcaattaccgtatgtaatcaattatgaattacct
aatgtcccagaaacttatgttcatcgaattggtcgtacaggtcgtgcgggtcgcgaagga
aaagcaatctcattatgtgctgctgatgaaagaggtgatttggcaaatattgaaaaatta
attggcaactatgttactatcattaaaacgccaaaagaattttataaattacctgatgcc
aatagcaacaataatttcaaaaaaacaaacacaggtttcaaaccaaagaaagacacaaaa
ccgaaaaatcctcatcgagggagaagaaaataa
DBGET
integrated database retrieval system
