Empedobacter stercoris: HNV03_10845
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Entry
HNV03_10845 CDS
T06804
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
este
Empedobacter stercoris
Pathway
este03410
Base excision repair
este03430
Mismatch repair
este03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
este00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HNV03_10845 (recJ)
03430 Mismatch repair
HNV03_10845 (recJ)
03440 Homologous recombination
HNV03_10845 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
este03400
]
HNV03_10845 (recJ)
DNA repair and recombination proteins [BR:
este03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HNV03_10845 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HNV03_10845 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNV03_10845 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QNT15114
LinkDB
All DBs
Position
2255878..2257578
Genome browser
AA seq
566 aa
AA seq
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MEKTWEIKEQATTEVIKDLRESLNISEVLAILLAQRGITNFSQAKSYFNPSLKELHDPFL
MKGMSDAVSRIKNAIDDEENILIFGDYDVDGTTAVTLFYEFLTSIYSKVFFYIPDRNNEG
YGISQQSIQFAVDHNISLVIVLDCGIKAHEEINYAQSKKIDYIICDHHLPDRSVPKAYAV
LDPKQKGCRYPYKELSGCGVGFKLAQAYTEKFNLPKENLLPLLDLVAVSIAADIVPITGE
NRILAYAGLQRLNSEPRLAFQQLIPTNIKNNVNISNVVFSIAPKINAAGRIKHGSEAVRF
MLSTDEEDCRKYLNDINSLNNERKTLDLDMTHDALLQLNQINTDEKYSTIVYDSSWNKGV
IGIVASRLVDLYYKPTIVFTKNNEGEIVGSARSIQEFDIHSAIATNKDLLTQFGGHMAAA
GLAMKEENFEKFKIKFDETVKEMSNGKHFTPSILIDKEISFNDMTRTFLESVMRMAPFGP
ENMNPVFLSKDLLATDFRLVGKEHARLYVHQRDTRITFPAIGFKLGKFGPKLEKGQSFDM
VYTIGMNYWQGKGTWQLNIKDIRFND
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacatgggaaataaaagaacaagccacaactgaggtaattaaggatttaaga
gaatcacttaacatttcagaggttcttgctattttattagctcaacgtggaataacgaat
tttagccaagctaaatcgtatttcaacccctctttaaaggaattgcatgatccttttttg
atgaaaggaatgtctgatgcagtttcgcgtatcaaaaacgctatagatgacgaagaaaat
atcttaatatttggagactacgatgtagatggaacgacagctgtaacattattttacgaa
tttctgacttctatctactcgaaagtctttttttatattccagatcgaaacaacgaaggt
tatggcatctctcaacaaagtatacaatttgctgtagatcataacatttcactggttatt
gtgttagattgtggcataaaagctcatgaagaaatcaactatgcacaatcaaaaaaaata
gattatattatttgcgatcaccatttaccagatcgttctgtgccaaaagcctatgctgtt
ttggatccaaaacaaaaaggttgccgttacccgtacaaagagttgagcggctgtggagtt
ggatttaaattagcacaagcatataccgaaaagtttaaccttccgaaagagaatctttta
ccacttttagatttagttgctgtaagtattgcggctgatattgtacccattacgggtgaa
aatcgcatcttagcttatgcaggtttacaacgattaaactctgaacctcgtttagcattt
caacaattaattccgaccaatattaaaaataatgtcaacatttcgaatgttgttttttca
attgcgccaaaaattaatgccgctggacgaataaaacacggttctgaagctgttcgtttt
atgttgagtacagacgaagaagattgtcgtaaatacctgaatgacataaattctttgaat
aacgaacgcaaaacgttggaccttgacatgacacatgatgcgctattacaactaaatcaa
atcaatacagatgaaaaatattcgacaattgtttacgattcttcttggaataagggagtc
ataggaattgttgcttcgcgtttagttgacttgtactacaaaccgacgattgtatttacg
aaaaacaatgaaggagaaatagtaggttcggcacgttctattcaagaatttgatattcat
tctgctatcgcaaccaacaaagatttgctaactcaatttggtggacatatggcggcggct
ggtttagcaatgaaagaagaaaacttcgagaagtttaaaataaaatttgatgaaacggta
aaagaaatgtcgaacggcaaacactttacaccttctattttgattgataaagagatatcg
ttcaacgacatgacacgtacttttttagaatctgtgatgcgtatggctccttttggtcca
gaaaatatgaatcctgtttttctgtcaaaagatctattggcaacagattttagattagtt
ggtaaagaacatgcacgtttgtatgtacatcaacgagatacgcgtattacatttcctgca
ataggtttcaaattaggtaaatttggtccaaaattagagaaaggtcaatcgtttgatatg
gtttatactatcgggatgaattattggcaaggaaaaggaacttggcaattaaacatcaaa
gacattcgtttcaacgattag
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