Escherichia sp. E4742: FEM44_14090
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Entry
FEM44_14090 CDS
T06276
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
esz
Escherichia sp. E4742
Pathway
esz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FEM44_14090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esz03019
]
FEM44_14090
03400 DNA repair and recombination proteins [BR:
esz03400
]
FEM44_14090
Enzymes [BR:
esz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FEM44_14090
Messenger RNA biogenesis [BR:
esz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FEM44_14090
DNA repair and recombination proteins [BR:
esz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FEM44_14090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QCT88226
LinkDB
All DBs
Position
complement(2880583..2883063)
Genome browser
AA seq
826 aa
AA seq
DB search
MEEQWSRLQNALTTCFSNDVTFTEGIDNPFLKRLIKIVTDADAGTSDVFAGYADALRAAL
ANGIEAPWLPFPPERAEIPQAGWGLTKSVTASILSLSEDANISATKATYLRRTRRNLLQP
EMDPALKNLLVETPHTQYRGFGQQAAIRTMLTSDPNSTLMINLPTSCGKSLITQVQAISA
PDNALTLVIVPTVALAIEQADFMRDMLRKAEQDHGGSYVWVGGQDVATRKTLIERLRSGT
QRVLFCSPEVAKSSLVPVLFELAKNHLIGAVVIDEAHLIDQWGAEFRPDFQLIAPLIRSL
KAQPGCHFRTLLLSATWSQSTRNVIVDLFRSDDSELIEITANFLRPEPEYFVHAERDEHA
HQQRVESLLMTLPRPLILYCTKRSDAEKWHQRLQELDFHRIGLFHGDTAPLERRKLITQW
ASDQLDIMVATSAFGVGMNKSDIRSVIHAAIPENIDRYYQECGRAGRDGKACQAHLVWHN
DQLKTAEELSVEKLIGVEKGFLRWKAMFDLHKPSNIADYQVSLDTKAEHIEHLGNRNEAW
NRRTLLLMQRAGLIELVYAAPEIPAEFRENEQENNAAVAEWFTRYYNTVHIHHCNDSHRS
EEYWNTFVEKARQQELDKRRAAFTILKNWLFNPQTPLCTILRQFYVYQNHSPELTCGGCP
GCRAQGKSAFSPTVGNAVKIIRATPKKRARYVGAVKKVYYREDLNIRELLMELRITLRHL
INSGDYATIRADKIVFSQLERTLDAVSRFWSAQKLNAPMSDCAEIVIVANTATVLPALPH
TQYERIIIAPQHLADPEHPYRKWWESAGNAQPLETFIRQLQYVNYQ
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcaatggtcacgacttcagaacgcgctgaccacctgcttcagtaatgatgtt
acctttactgaaggtatcgacaaccctttcttaaaacgattgattaaaatcgtaaccgat
gccgacgcaggtaccagtgatgtttttgctggctatgctgatgccctccgggctgcttta
gccaacggtattgaagccccatggcttccctttccgccagaaagggctgaaataccacaa
gcaggttggggattaacgaaatccgtcactgccagcattctttccctgtctgaagatgca
aatatttcggcgacaaaagcaacttatttgcgtagaaccagacggaatttgctgcaacca
gaaatggacccggcgctgaagaacttattggttgagactccccacacgcaatatcgaggt
tttgggcagcaggctgcaatacgtacgatgctcacttcagacccaaacagtacgctgatg
attaatctcccgaccagttgcggtaaaagtttaattacgcaagttcaggcaattagcgca
ccagacaacgcactcaccctagtgattgtacccaccgttgcactggcgattgaacaagcg
gatttcatgcgagatatgttacgcaaagctgaacaggatcatggtggtagctatgtctgg
gttggcggccaggatgttgcgacgcgtaagacactaatagagcggttacgatcgggtaca
caacgcgtacttttttgttcaccagaggttgctaaatcttcactggtccctgtgcttttt
gaactagcaaaaaatcacctgattggggccgtcgtgattgatgaagcgcacctgattgac
caatggggagcagagttccgaccagattttcagcttatcgcccccttgattcgttctcta
aaagcacaacccggatgccatttccgcacattactattatctgcgacatggagccagagc
acacgcaatgtcattgtggatttatttcgcagcgatgatagtgaacttattgaaataaca
gccaattttctacgccctgaacccgaatactttgttcacgccgaacgtgatgaacacgca
catcagcaacgtgtagaaagcttgctgatgacccttccgcgcccacttattctctattgt
acgaaacgttcagatgctgaaaaatggcatcagcgattacaggaactggattttcaccgg
attgggcttttccatggcgataccgcccccctcgaacgcagaaaactcattacgcagtgg
gcaagcgaccaactggacattatggtcgcaacgtcggcatttggtgtcgggatgaacaaa
agcgacatccgttcagtaattcatgccgccatcccggaaaatattgaccgttattaccag
gagtgcggccgtgccgggcgagacggcaaagcctgtcaggcacacctcgtctggcataac
gatcaattaaaaacagcagaagaactttctgtcgaaaagcttattggcgtcgaaaaaggt
ttcctacgctggaaagcgatgtttgacctgcacaagcccagtaacattgctgattaccag
gtttcgctcgacaccaaagcggaacacattgaacacctcggcaaccgcaacgaagcatgg
aaccgcagaactttgcttctgatgcaacgagcaggacttattgaactggtgtatgccgcc
ccggagattcccgcagaatttcgtgaaaatgagcaagaaaacaatgcggctgtagcagaa
tggtttacccgctattacaacactgttcatatccaccactgcaacgactcgcaccgttcg
gaagagtactggaatacctttgttgagaaggcccgtcagcaggaattagacaaacgtcgg
gctgcgttcacgatattgaaaaactggcttttcaacccacaaacgcctctgtgtactatt
ctccgccagttctacgtttatcagaatcattcaccagaattaacctgtggtggttgcccg
ggttgcagggctcaggggaaaagtgcattttcgccgacagtgggcaatgccgtaaaaatt
atacgagccacgccaaagaaaagagcacgctatgttggcgctgtgaagaaagtttattat
agagaagaccttaatatacgagaattactcatggagttgcgcatcacgcttcgtcactta
attaactccggtgactatgcaaccatccgtgcggacaaaattgttttctcgcaacttgag
cgcacacttgatgctgtttcacgtttctggagcgcacaaaaacttaatgcccctatgtca
gattgtgcggaaattgtcattgtcgctaataccgccacggttctgcctgcactgcctcat
acgcaatacgagcgcattattatcgccccacagcacttggctgaccctgaacatccatat
agaaaatggtgggagagcgcaggtaacgcgcagcctttggaaacctttatcaggcaacta
cagtatgtcaattatcaataa
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