Erwinia tasmaniensis: ETA_01960
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Entry
ETA_01960 CDS
T00711
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
eta
Erwinia tasmaniensis
Pathway
eta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETA_01960 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eta03021
]
ETA_01960 (rho)
03019 Messenger RNA biogenesis [BR:
eta03019
]
ETA_01960 (rho)
Transcription machinery [BR:
eta03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ETA_01960 (rho)
Messenger RNA biogenesis [BR:
eta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ETA_01960 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
CAO95242
UniProt:
B2VG60
LinkDB
All DBs
Position
235350..236609
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTSSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacgccggtttctgacctgatcactctcggcgaaaat
atggggctggaaaacttggcccgcatgcgcaaacaggatattattttcgccatccttaag
cagcatgctaaaagtggcgaagacatcttcggcgatggcgtacttgagatattgcaggac
ggatttggtttcctccgttcaggagacagttcctacctcgccggccctgatgatatctac
gtttcccccagccaaatccgtcgtttcaacctccgcaccggcgacaccatctctggcaag
atccgcccaccgaaagagggtgagcgctattttgcactgctgaaggttaacgaggttaac
tacgacaaaccggaaaatgcgcgtaataaaatcctgtttgaaaacttaacgccgctgcat
gccaactctcgcctgcgtatggagcgtggcaacggttctaccgaagacctgaccgcacgc
gtactggatctggcttcgccgatcggtcgtggtcagcgtggtttgatcgtcgctccgccg
aaagcgggtaaaaccatgctgctgcagaatattgcgcagagcattgcctacaaccatcct
gactgcgtgctgatggtgctgctgattgacgagcgcccggaagaagtgacagagatgcag
cgtctggtgaaaggtgaagtgatcgcctctaccttcgatgagcccgcatcacgtcacgtc
caggttgctgaaatggttattgagaaagccaaacgcctggtcgagcacaaaaaagatgtt
atcatcctgctggactcgattacccgcctggcacgcgcctacaacaccgtggttcctgcc
tctggcaaggtactgaccggtggtgtggatgctaacgccctgcaccgtccaaaacgtttc
ttcggcgcggcacgtaatgtggaagagggcggtagcctgaccattatcgcgaccgcactg
gttgataccggttcgaagatggatgaagtcatctacgaagagtttaaaggtacgggtaac
atggaactgcatctggcacgtaaaattgccgagaaacgcgtgttccctgcgattgattac
aatcgttctggtacccgtaaagaagagttgctgacttcgtcggaagagctacagaaaatg
tggatcctgcgcaagattatccatccaatgggtgaaattgatgcgatggagttcctgatt
aacaagttggcgatgaccaaaaccaacgatgagttcttcgatatgatgaaacgttcgtaa
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