Erwinia tasmaniensis: ETA_20060
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Entry
ETA_20060 CDS
T00711
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (ATP-dependent helicase mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eta
Erwinia tasmaniensis
Pathway
eta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ETA_20060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eta03400
]
ETA_20060 (mfd)
Enzymes [BR:
eta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ETA_20060 (mfd)
DNA repair and recombination proteins [BR:
eta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ETA_20060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAO97052
UniProt:
B2VDM0
LinkDB
All DBs
Position
2266499..2269945
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEIYRYDLPSRAGDQRQLGQLTGAACAVECAEIAERHQGPVMLIAQDMQNALRLQDEIK
QFTDQPVMALADWETLPFDSFSPHQEIISSRLSTLYQLPTLASGILILPVNTLMQRVCPH
NFLHGHALVMQKGQRLSRDTLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSERPY
RIDFFDDEIDSLRLFDIDSQRTLEEVAAINLLPAHEFPTDKNAIELFRSQWREHFDVRRE
AEHIYQQVSKGTLPAGIEYWQPLFFEQPLLPLFSYLPANTLLVISGDVESSAGRFWQDVN
ARYENRRVDPMRPLLPPASLWLRSDELFGELKQWPRIQLKTELLPEKSGNTNLDYAALPS
LAVQAQAKAPLDALRHFLESFSGPVVFSVESEGRREALQELLARIKLKPGAIRSLPEAHG
PGHYLLIGASEHGFIDGLRNRALICESDLLGERVSRRRQDSRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGLTTLETGGIQAEYLMLAYAGDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFE
TTIDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPIRIEMMSRFRTAKEQAQVLADAQEGKVDILIGTHKLLQNEIKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDDLSVREAILREVLRGGQVYYLYNDVENIEKAATRLSELVPEARVAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKSMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMETIGFSLYMDLLENAVDALKEGREPSLEDLTNSQTDIELRMPALLPDDYIPDV
NTRLSFYKRIASAQHNDDLDDIKVELIDRFGLLPDAARNLLDIAALRLAAIKLGVRKVEA
SEKGGFIEFSEKNKVDPAWLIGLLQQEPQHWRLDGPTRIRFIRDLSERKVRITWVSEFIN
KMVDNASV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaatctaccgttatgacctgccgtccagagcaggtgaccagcgccagctgggg
caactgaccggcgcggcctgcgccgttgaatgtgccgaaatagctgaacgacatcagggc
ccggttatgctgattgcgcaagatatgcaaaatgcgctgcgccttcaggatgaaattaaa
cagtttaccgaccagccggtcatggcgttggcagattgggagaccctgcccttcgacagt
ttctcaccgcaccaggagatcatctcctcccggctttctaccctttatcaactgcccacg
ctggcttcaggcattttgatccttccggtcaacaccctgatgcagcgcgtttgccctcac
aatttcctgcacggccacgcgcttgtaatgcagaaagggcaaaggctgtcgcgtgacacg
ctgcgcgcccagcttgaacaggcgggctaccgcagcgtcgatcaggtgatggaacacggc
gagtttgccacccgtggcgcgctgctcgatctttacccgatgggcagtgaacgtccttac
cgtatcgactttttcgatgatgagatagacagcctgcgcctgtttgatattgacagccag
cgcacgctggaagaggtggcggcgattaacctgctgccggctcatgagttcccgaccgat
aaaaacgccattgagttgttccgcagccagtggcgtgaacattttgacgtgcggcgtgag
gcggaacatatctatcagcaggtcagcaaaggcacgctgcccgccgggatagagtactgg
cagccgctgtttttcgagcaacctttactgccgctgttcagctacctgcccgccaacacc
ctgctggtcatttctggcgatgtggaatccagcgccgggcgcttctggcaggatgttaac
gcgcgttatgaaaaccgccgcgtcgatccgatgcgcccgctattgccgcccgcatccctg
tggctgcgcagcgacgagctgttcggtgaattgaagcagtggccacgcatccagctcaaa
accgagctgctgccagagaagagcggtaataccaatctggattatgccgcgttgccgagc
ctggccgtacaggcacaggcgaaggccccgctggatgcgctgcgccactttctcgaatcc
ttcagcggtccggtggtgttttcggtggagagtgaaggtcgccgcgaggctttacaggaa
ctgctggcgcgcatcaagctcaagccgggcgcgatccgttcactgccggaggcgcacggg
ccggggcactatctgttaatcggcgccagcgaacatggttttattgatggcttgcgcaat
cgcgcactcatctgtgaaagcgatctgctgggcgagcgtgtaagccgtcgacgccaggac
agtcgccgcaccatcaatccggatgtgttgatccgtaacctcgccgagctgcaccccggc
cagccggtggtgcatctggagcatggcgttgggcgctacattggcctgaccacgctggaa
accggcggtattcaggcagagtatctgatgctggcctacgccggagatgcaaaactgtac
gtgccggtatcgtcactgcatctcatcagccgctatgcgggaggggctgaggagaacgct
ccgctgcataagctgggcagcgacgcctggtcccgcgccaggcagaaggccgccgaaaag
gtgcgcgacgtggcggcagagctgctggatatttatgcgcagcgtgcggcaaaaaccggc
tttgcctttaagcatgataagcagcagtaccagctgttctgtgaaagtttcccctttgaa
accaccatcgaccaggcacaggcaatcaatgcggttttgagcgatatgtgccaaccgctg
gccatggaccgtctggtctgcggcgacgtcggttttggtaaaaccgaggtcgccatgcgc
gccgccttcctcgcggtggaaaaccataagcaggtagcggtgctggtgccaaccaccctt
ctggcccagcaacattacgataatttccgcgatcgctttgccaactggccgatccgtatt
gagatgatgtcacgcttccgtacggccaaagagcaggcacaggtgctggcagacgcccag
gaaggcaaggtcgatattttgatcggcacccataagctgttacaaaatgagattaaatgg
cgcgatcttggcctgctgatcgtcgatgaagagcatcgttttggcgtgcgccataaagag
cgcatcaaagcaatgcgcgccgacgtggatattttaaccctgaccgctacccctatcccg
cgcacgttgaatatggcgatgagcgggatgcgcgatctgtcgatcattgccacacctccg
gcgcgccgactggcggtaaagaccttcgtacgcgaatacgatgacctgtcggtacgcgag
gcgatactgcgagaggtactgcgcggcggtcaggtttactatctgtataacgatgtggaa
aatattgagaaagcggcaacacggctatctgaactggtgcctgaggcccgggtggcgatc
ggtcatggccagatgcgcgagcgtgagctggaacgggtgatgaatgatttccaccatcag
cgtttcaacgtgctggtgtgcaccaccatcattgaaaccgggattgatattccaacggct
aacaccatcattattgagcgcgccgatcgcttcggcctcgcccagctgcatcagctgcgt
ggccgcgtcgggcgctctcaccatcaggcctatgcctggctgctgaccccacatcctaaa
tccatgacgaccgatgcgcataagcgcctggaggcgatagcctcgctggaagatctgggc
gccggatttgccctcgccacgcacgatctggagatccgtggtgccggtgaattacttggg
gaaggtcagagcggtcagatggaaaccatcggattttcgctgtatatggatctgctggaa
aatgccgttgatgccctgaaagagggacgtgagccttctctggaggatctgaccaacagt
cagaccgacatcgagctgcgtatgccggcgctgttgccggatgattacatcccggacgtc
aatacccgcctgtcgttttataaacgtattgccagcgctcagcacaacgacgatttggac
gacatcaaagtggagctaattgaccgcttcggcctgctgccggacgcggcgcgtaacctg
ctggatatcgccgcgctgcgtctggcggcgataaagctgggcgtgcgcaaagtcgaagcc
agtgagaaaggcggtttcatcgaattctctgaaaagaataaggttgaccccgcgtggctg
atcggcctgttacagcaggaaccgcagcactggcgtctggatgggccaacgcgtatccga
tttattcgcgatctctccgagcgtaaagtacgcataacgtgggtgagtgagtttattaac
aagatggtggataacgccagcgtataa
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