Edwardsiella piscicida C07-087: ETAC_00505
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Entry
ETAC_00505 CDS
T02509
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAC_00505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etc03019
]
ETAC_00505
03400 DNA repair and recombination proteins [BR:
etc03400
]
ETAC_00505
Enzymes [BR:
etc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ETAC_00505
Messenger RNA biogenesis [BR:
etc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETAC_00505
DNA repair and recombination proteins [BR:
etc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ETAC_00505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Response_reg
Motif
Other DBs
NCBI-ProteinID:
AGH72234
LinkDB
All DBs
Position
111094..112923
Genome browser
AA seq
609 aa
AA seq
DB search
MATAAVINTERLAEGVLKDTFGYQQFRPGQQAIVEAAIAGRDCLVVMPTGGGKSLCYQIP
ALVRDGLTIVVSPLISLMKDQVDQLQANGVNAACLNSTLNREQQQAVYAGCRSGEIRLLY
IAPERLMMDNLLDTLPQWNPTLLAVDEAHCISQWGHDFRPEYSALGQIKRRFPQMPVIAL
TATADDATRQDILGLLDLRDPLVQVSSFDRPNIRYTLIEKFKPLDQLWHFVQSQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNGRRAEVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLFYDPADMAWLRRCLEEKPEGAQ
KEIERHKLNAMNAFAEAQTCRRLVLLNYFGEGRQESCDNCDICLDPPKRYDGLLDAQKAL
STVARVGQRFGIGYVVEVLRGANSARIREWGHDKLSVYGIGREHSTEHWVSILRQLIHLG
LVTQNIALHSALQLTEAARPVLRGEVALQLAVPRVINLKARSSAQKSYGGNYDRKLFAKL
RKLRKAIADEENIPPYVVFNDATLLEMAEQMPLRAGDLLSINGVGQRKLERFGAPFMTLI
REHLDEGQD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacggcagcggttattaatacagagaggctggcagagggggtgcttaaagacacc
ttcggctatcagcagttccgcccgggacaacaggccatcgtcgaggcggcgatagccggg
cgcgactgtctggtggtaatgccgaccgggggcggaaaatccctgtgttatcaaataccg
gcgttagtgcgggatgggttgaccatcgtcgtttctccgctgatttccctgatgaaggat
caggtcgatcagctgcaggctaacggggtaaacgccgcctgcctgaactcgaccctgaac
cgtgagcagcagcaggcggtctacgccggctgccgcagcggggagatccgtctactgtac
atcgccccagagcggctgatgatggataacctgctggatacgctgccgcagtggaatcct
acgctgctggcggttgatgaggcgcactgtatctcccagtgggggcacgatttccggccg
gaatacagcgcgctggggcagattaagcgccgtttcccgcagatgccggtgatcgcgctg
acggcaaccgccgatgacgcgacccgccaggatatcctgggcctgctcgatctgcgcgat
ccgctggtacaggtcagcagctttgaccgccccaatatccgctataccctgatcgaaaaa
tttaagccgctggatcagctgtggcactttgtgcagtcgcagcgcgggaagtcaggcatc
atctactgcaacagccgcgccaaagtagaggacaccgccgcgcgcctgcaaagccgtggc
ctgagcgtcggtgcgtatcacgcggggctggacaatggtcgccgcgccgaggtgcaagag
gcgtttcagcgcgatgatttgcagattgtggtggcgacggtggcctttggcatggggatc
aacaagcccaacgttcgcttcgtggtgcacttcgatattccgcgcaatatcgaatcctac
tatcaggagaccgggcgtgccgggcgcgacgggctgccggcggaggcgctgctgttttac
gatccggccgatatggcctggctgcgccgctgtctggaggagaagccagagggcgcacag
aaggagatcgagcgtcacaagctgaatgcgatgaatgcctttgccgaggcgcaaacctgt
cgtcgtctggtgctgctgaactactttggcgaggggcgacaggagagctgcgataactgc
gatatctgcctggatccgcccaagcgctacgatggcctgctcgatgcgcagaaggcgctg
tcgaccgtggcccgcgttgggcagcgttttggcattggctatgtggtcgaggtgctgcgc
ggcgccaacagcgcccgtatccgcgaatgggggcacgataagctgtcggtctacggcatt
ggccgcgagcacagcaccgagcactgggtgagcattctacgccagctgatccacctgggg
ctggtgacgcagaatattgccctgcactcggcgctgcagctgacggaggcggcgcgcccg
gtcctgcggggagaggtcgccctccagctggcggttccccgggtcatcaacctcaaggcg
cgcagcagcgcacagaagagctatggcggcaactatgaccgcaagctatttgccaagctg
cgcaagctgcgcaaggcgatcgccgacgaagagaatatcccgccctacgtcgtgtttaac
gacgcgacgctgctggagatggcggagcagatgccgctgcgggcgggcgatctgctcagc
atcaacggcgttggccagcgtaagctggagcgctttggcgcgccgtttatgaccctgatc
cgcgaacatctggatgaggggcaggactag
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