Edwardsiella piscicida C07-087: ETAC_00730
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Entry
ETAC_00730 CDS
T02509
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ETAC_00730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etc03021
]
ETAC_00730
03400 DNA repair and recombination proteins [BR:
etc03400
]
ETAC_00730
Enzymes [BR:
etc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ETAC_00730
Transcription machinery [BR:
etc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ETAC_00730
DNA repair and recombination proteins [BR:
etc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ETAC_00730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AGH72279
LinkDB
All DBs
Position
167260..171480
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKGMDLEAECEQLREELGETNSETKRKKLTKRIKLLEAFILSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGDPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITQYSKSADGEMVPNTGLIDTTVGRAILWMIVPKGLPYTIVNQPLGKKA
ISKMLNACYRALGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVLKPGTADILVPRNTLLNEKWCDLLEEHSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGNLKL
TNAKFVVNTDGKLVITSRNTELKLIDEFGRTKESYKVPYGATLAKGDGAEVNGGETVANW
DPHTMPVITEVSGFIRFADMIDGQTVTRQTDELTGLSSQVVLDSAERTGSGKDLRPALKI
VDANGDDVLLPGTDMPAQYFLPGKAIVQLEDGIAISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPLDGSDAYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVNAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIANAGSSEFLEGEQVEVSRVKIANRLLESDGKIAATYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAADTSSA
PQVSAEEASANLAELLNAGLLGGNDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactgaagtttctgaaagcgcaaactaagaccgaagagtttgacgcgatc
aaaattgcgctggcttcgccagacatgatccgttcctggtctttcggcgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagccggaacgtgacggtcttttctgcgcccgt
atcttcgggccggtgaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgtggtgtcatctgtgaaaaatgcggcgttgaagtgacccaaaccaaggtgcgccgtgag
cgcatgggtcacatcgagctggcttccccgaccgcgcacatctggttcctgaagtccctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
tttgaatcttatgtcgtcgtcgaaggcgggatgaccaacctggagcgtcgtcagatcctg
accgaagagcagtatctggacgcactggaagagttcggtgacgaattcgatgccaagatg
ggcgccgaggcgatccaggctctgctgaaagggatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgggtgagaccaactctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcattctgtccggtaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccgctggttccgctggacggcggccgtttc
gcgacctccgatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctggctgcgccggatatcatcgtacgcaacgaaaagcgtatgctgcag
gaagcggtcgatgccctgctggataacggccgtcgcggtcgtgccatcacgggctctaac
aagcgtccgctgaagtctctggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgcgtcgactactccggtcgttccgttatcaccgtaggcccgtac
ctgcgtctgcatcagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
atctatggcaagctggagctgcgtggtcttgctaccaccatcaaagcagccaagaagatg
gttgagcgtgaagaagccgtggtatgggatatcctcgacgaggtgatccgcgagcacccg
gtaatgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgaaccgctg
ctgatcgaaggtaaagcgattcagctgcacccgctggtgtgtgcggcatacaacgccgac
ttcgacggtgaccagatggcggtacacgtaccgttgaccctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctctctccggcgaacggcgatccgatcatc
gttccgtctcaggacgttgtattgggtctgtactacatgacccgtgactgcgtgaacgcc
aaaggcgaaggcatggtgctgagcggcccgaaagaggccgagcgtatttatcgcgccggt
ctggcgtcgctgcatgcccgcgttaaagtgcgtatcacccagtacagcaaaagcgccgat
ggcgagatggttccgaacaccgggcttatcgacaccaccgttggccgtgccatcctgtgg
atgatcgtaccgaaaggtctgccgtacactatcgttaaccagccgctgggcaagaaagcc
atctccaagatgctgaacgcctgctaccgtgcgctgggtctgaagccgaccgttatcttc
gctgaccagatcatgtataccggtttcgcctatgcggcgcgctccggtgcgtctgtcggc
atcgacgacatggtgatcccggagaagaaagcggggatcatcgccgaggccgaagccgaa
gtggccgagatccaggagcagttccagtctggtctggtaaccgccggcgaacgttataac
aaggtcatcgatatctgggccgccgcgaacgagcgcgtggccaaggcgatgatggaaaac
ctgtcgactgaaaccgttatcaaccgcgatggcgaagaagagcgtcaggtctcctttaac
agcatctttatgatggccgactccggtgcgcgtggttctgccgcccagattcgtcagctg
gccggtatgcgtggcctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcaaacttccgtgagggtctgaacgtactgcagtacttcatctcaacgcacggtgcgcgt
aaaggtctggcggataccgcactgaagacggcgaactccggttatctgacccgtcgtctg
gttgacgtggcccaggatctggtggttatcgaggacgactgtggtacccacaacggcatc
gtgatgaccccggttatcgaaggtggcgacgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgacggcagaagaagtgctgaagccgggtacggcggatattctggtgccgcgt
aacaccctgctgaacgaaaaatggtgtgacctgctggaagagcactctgtcgacagcgtg
aaagtgcgctccgtcgtaagctgtgaaactgacttcggcgtgtgcgcccactgctacggt
cgcgatctggcccgtggtcacctggtgaacaaaggcgaagccatcggcgttatcgcggca
cagtccatcggtgaaccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggcggctgagtccagcatccaggtgaagaacaagggtaacctgaagctg
accaacgctaagttcgtggtgaacactgacggtaagctggttatcacttcacgtaatacc
gaactgaagctgatcgacgagtttggccgtaccaaggaaagctacaaggtgccttacggt
gccacgctggccaagggtgacggtgccgaggtgaacggcggtgagacagtggctaactgg
gatccgcataccatgccggttatcaccgaggttagcggcttcatccgcttcgccgatatg
atcgacggccagacggtaacccgtcagaccgacgagctgaccggtctctcctctcaggtg
gttctggattctgcagagcgtaccggtagcggtaaagatctgcgtccggcgctgaagatc
gtcgacgccaacggtgatgacgtgctgctgccgggtaccgatatgccggcccagtacttc
ctgccgggtaaagcgatcgtacagctggaggatggcattgccatcagcgccggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaagagccggcaatcctggccgagatcagc
ggcgttgtttccttcggtaaagagaccaagggcaaacgtcgcctggtgatcacgccgctg
gatggcagcgatgcctacgaagagatgattccgaagtggcgtcagctcaacgtgttcgaa
ggcgaacgcgtggaacgcggcgacgtgatctccgacggtccggagtctccgcatgacatc
ctgcgcctgcgcggcgtgaacgcggtaacgcgctatatcgttaacgaagtccaggacgta
taccgtctgcagggcgttaaaattaacgataagcacatcgaagttatcgtgcgtcagatg
ctgcgtaaggcgaccatcgccaatgccggtagctccgagttcctggaaggcgagcaggtg
gaagtgtcccgcgtcaagattgccaaccgcctgttggagtctgacggtaagattgccgcg
acctatatgcgcgatctgctgggtatcaccaaagcctctctggcgaccgagtccttcatc
tccgcggcctccttccaggagaccacccgcgtgctgactgaagcggccgttgccggtaag
cgtgatgagctgcgtggcctgaaggagaacgtcatcgttggtcgtctgatcccggcgggt
acgggttatgcctaccaccaggatcgcatgcgccgtcgcgctgccgatacctctagcgca
ccgcaggtgagcgcggaagaagccagcgccaacttggccgagctgctgaacgccggtctg
ctgggtggcaatgacgaataa
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