Edwardsiella piscicida C07-087: ETAC_01820
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Entry
ETAC_01820 CDS
T02509
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAC_01820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etc03019
]
ETAC_01820
03016 Transfer RNA biogenesis [BR:
etc03016
]
ETAC_01820
Enzymes [BR:
etc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ETAC_01820
Messenger RNA biogenesis [BR:
etc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ETAC_01820
Transfer RNA biogenesis [BR:
etc03016
]
Prokaryotic type
tRNA degradation factors
ETAC_01820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
OB_RRP5_4th
S1_2
S1_RRP5
aRib
KH-I_KHDC4-BBP
PF0610-like_N
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AGH72497
LinkDB
All DBs
Position
430974..433103
Genome browser
AA seq
709 aa
AA seq
DB search
MTLLTPTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFP
LTVNYQERAYAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVV
SVNPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLV
VAGTDNAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWHAPEV
NVALQHRVAEMAEARLGEAYHITEKQARYAKVDEIKESVIADLLAEDDALDAGEISDILG
ALEKAVVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGT
ERDAQNIDELTGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQ
DAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVL
SDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVME
QAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA
ATDGDKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR
VEKVTDYLQMGQEVAVKVLEVDRQGRVRLSIKEANASAAAGQDAPADAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgactttgttaacgccaaccgttcgcaaattccaatacggccagcataccgttacgctg
gaaaccggcatgatggcccgccaggccaccgcagccgtgatggttaccatggatgacacc
gcggtattcgttaccgtggtgggggcgaaaaaagcccgtgaaggtcaggacttcttcccg
ctgaccgttaactaccaggagcgcgcctacgcggccggtcgtttccccggcggcttcttc
cgccgtgaaggccgtccgggtgaaggtgagaccctgaccgcgcgtctgatcgaccgtccg
atccgtccgctgttcccggaaggcttcctcaatgaggtgcaggtcgttgcgaccgtggtt
tccgtgaacccgcaggtcagcccggatatcgtggcgatgatcggcgcatccgccgcgctg
agcctgtctgggatcccgttcaacggcccgatcggcgccgctcgcgtaggttacatcaac
gatcagtacgtgctgaacccgaccatggatgagcttaagcagagccgtctggacctggtg
gtagccggtactgataacgccgtgctgatggtggaatctgaagccgatctgctcagcgaa
gatcagatgctgggcgcggtggtcttcggccacgatcagcagcaggttgtgattgaaaat
attaaggcgctggcggctgaagtcggtaaaccgcgctgggaatggcatgcgccggaagtg
aacgttgcgctgcagcaccgcgtggccgagatggccgaagcccgcctgggtgaagcctat
cacatcactgaaaagcaggcccgctacgcgaaagttgacgagatcaaagaatctgtcatc
gccgatctgctggcagaagacgatgcgctggatgccggtgagatcagcgacatcctgggt
gcgctggagaaagccgtggtgcgtggccgcgttctgcgcggtgagccgcgtatcgatggc
cgtgagaaggacatgatccgtgcgctggacgtacgtaccggcgtgctgccgcgtacccac
ggctctgcgctgtttacccgcggtgaaacgcaggcgctggtgacggcgaccctgggcacc
gagcgcgacgcacagaacatcgatgagctgaccggcgagcgtactgaccgtttcctgcta
cactataacttcccgccgtactccgtcggtgaaaccgggatgatgggctcaccgaagcgc
cgtgaaatcggccatggccgtctggctaagcgcggtgtgctggcggtaatgccgtctcag
gatgcgttcccgtacacggtgcgtgtggtctctgaaatcaccgaatccaacggttcctct
tctatggcctctgtctgcggtgcctctctggcgctgatggacgccggtgtgccgatcaaa
gccgccgtggctggtatcgccatgggtctggtgaaagagcaggataactttgtcgttctg
tctgacatcctgggtgacgaagaccacctgggtgatatggactttaaagtggccggtagc
cgcgacggcgtgaccgcgctgcagatggatattaagatcgaaggcatcacccgcgagatc
atgcaggttgccctgaaccaggccaagggtgcgcgtctgcatatcctgggtgtgatggag
caggcgatcaatgcaccgcgcggcgatatctccgagttcgcaccgcgtatccataccatt
aagatcaatcctgagaaaatcaaggacgtgatcggtaagggcggctctgtgatccgtgcg
ctgacggaagagaccggcaccaccatcgaaatcgaagatgacggtaccgttaagatcgca
gcgaccgacggtgataaggcaaaacacgccattcgccgtatcgaagagatcaccgccgag
atcgaagttggccgtatctatcagggtaaagtgacccgtatcgttgactttggcgccttt
gtggccattggcggcggtaaagaaggtctggttcatatttctcagatcgccgacaagcgc
gtagagaaagtgaccgactacctgcagatgggtcaggaagtggctgttaaggtgctggaa
gtcgaccgtcagggtcgcgtacgtctgagcatcaaggaagccaacgccagcgcagctgcg
ggtcaggacgcaccggctgacgcagagtaa
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