Edwardsiella piscicida C07-087: ETAC_01830
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Entry
ETAC_01830 CDS
T02509
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAC_01830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etc03019
]
ETAC_01830
03009 Ribosome biogenesis [BR:
etc03009
]
ETAC_01830
Enzymes [BR:
etc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETAC_01830
Messenger RNA biogenesis [BR:
etc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETAC_01830
Ribosome biogenesis [BR:
etc03009
]
Prokaryotic type
rRNA helicases
ETAC_01830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AGH72499
LinkDB
All DBs
Position
434281..436185
Genome browser
AA seq
634 aa
AA seq
DB search
MAEFETTFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIDPSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAE
HQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNI
ERTMKLTIPEVELPNAELLSTRRLAKFAARVQQQLESSDLDQYRALLAKLQPEDEQDMET
LAAALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRFARRERDERGGDRPRRERR
EVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDL
LTHFTRTRILNKPMNMQLIGDAPAREQRRERSGERGGERRSFGGRDGGRDGDRRSFGGQR
RFSDDRRGDRGFNRDSRSTRSDDNGHSRRRFNDA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttcgaaactacttttgctgacctggggttagctgcacctattattgaagcc
ctgaatgatttgggctatgagaagccgtcaccgattcaggcggcctgtattcctcacctg
ctgaacgggcgcgacgtgctgggcatggcgcagaccggcagcggtaaaacggcggcgttc
tctctgccgctgctgaacaatatcgatccgtcgttgaaagcaccgcaggtactggtgctg
gcgccgacccgtgagctggcggtacaggttgctgaagctatggcggatttttctaagcat
atgcacggcatcaacgtggtcgccctgtacggtggccagcgctatgacgttcagctgcgc
gccctgcgtcaggggccgcagatcgtggtcggtacgccgggccgtctgctggatcacctg
aagcgcggtacgctgagcctgaccagcctgcgtggcctggtgctggatgaagccgacgaa
atgctgcgtatgggctttattgaagacgttgagaccatcatggcgcagatcccggcggag
catcagaccgctctgttttctgccaccatgccggaggctatccgtcgtattactcgtcgc
tttatgaatgagccgcaggaagtgcgcattcagtccagcgtgacgacccgcccagacatc
agccagagctactggacggtgtatgggatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagactttgatgcggcgatcatcttcgtgcgcaccaagaatgccaccctggaa
gtggccgaagcgctggagcgtaacggctacagcagcgcggcgctgaacggcgacatgaac
caggcgctgcgtgagcagaccctggagcgtctgaaagacggtcgtctggatatcctgatc
gcgaccgacgtggctgcccgtggcctggacgtcgatcgcatcagcctggtcgttaactac
gatatcccgatggatgccgaatcctacgtgcaccgtatcggtcgtaccggccgcgccggc
cgtgccggtcgtgcgctgctgttcgttgataaccgtgaacgtcgtctgctgcgcaacatt
gagcgcaccatgaagctgaccattccggaagtcgaactgccgaacgccgagctgctcagc
actcgccgtctggccaagtttgccgcccgtgttcagcagcagctggagagcagcgatctg
gatcagtaccgtgcgctgctggctaagctgcagccggaagacgagcaggatatggaaacg
ctggccgctgcgctgctgaagatggcgcagggcgaacgtccgctgatcctgccgccggat
ccggttgttgagcgtcgtccgcgtcgtgaattccgcgagcgtgatgagcgcggtggcgat
cgcttcgcccgtcgcgagcgcgatgagcgcggcggcgatcgtccgcgtcgcgagcgtcgc
gaagtcggtgatatggagctgtatcgcatcgaagtgggtcgtgacgatggcgttgaagtt
cgtcatatcgtgggtgctatcgctaacgaaggcgatatcagcagccgctatattggcaac
attcgcctgttcggttcgcactccaccatcgagctgccgaaaggcatgccgggcgatctg
ctgacgcactttacccgtacccgcatcctgaacaagccgatgaacatgcagctgatcggt
gatgcgcctgcgcgtgagcagcgtcgcgagcgcagcggcgaacgtggtggtgagcgtcgc
agcttcggcggccgcgacggcggtcgtgatggcgatcgccgcagctttggcggtcagcgt
cgtttctctgacgatcgccgcggcgatcgcgggttcaatcgcgatagtcgtagcacccgc
tcagacgacaacggccacagccgtcgccgttttaacgatgcgtaa
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