Edwardsiella piscicida C07-087: ETAC_02210
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Entry
ETAC_02210 CDS
T02509
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ETAC_02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etc03021
]
ETAC_02210
Transcription machinery [BR:
etc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ETAC_02210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
HTH_SUN2
DNA_ligase_A_N
Laminin_II
Motif
Other DBs
NCBI-ProteinID:
AGH72575
LinkDB
All DBs
Position
complement(508243..510078)
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AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENIADEDAAEAAVQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEASEARLSDLITGFVDPNAEEDMAPTATH
VGSELPEEELDDDEDEDEDDDDDSDDDNSIDPELARQKFVELREQYEKTRLAIKAEGRSS
GKAQEEIQNLSEIFKQFRLVPKQFDYLVSNMREMMDRVRGQERLIMKLCVEQSKMPKKNF
ITLFTGNETSITWFDAALAMGKPWGEKLKDMREDVERSLQKLHQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATRDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaaacttcttgttaccaagggcaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgattaatgacatgggcatccaggtgatggaagaagcaccg
gatgccgatgacctgatgctggcggagaacattgccgacgaagacgccgcagaggcggcg
gtacaggttctgtccagcgtcgaatccgaaattggccgtaccaccgacccggtacgcatg
tacatgcgtgaaatgggcaccgttgagctgctgacccgcgaaggggaaatcgatatcgcc
aagcgtatcgaggacggtatcaaccaggttcagtgctccgttgccgaataccctgaggcc
atcacctacctgctggagcagtatgaccgcgtcgaagccagcgaagcgcgtctgtccgac
ctgatcaccggttttgtcgatcctaacgccgaagaggatatggccccgaccgcaacccac
gtgggttccgagctgccggaagaggagctggacgacgacgaggatgaggacgaagacgac
gacgacgacagcgacgatgacaacagcatcgatccggagctggcgcgtcagaagttcgtt
gagctgcgcgaacagtacgaaaaaacccgtctggctatcaaggccgaagggcgcagcagc
ggtaaggcgcaggaagagatccagaatctgtctgaaatcttcaagcagttccgcctggtg
ccgaagcagtttgactatctggtcagcaacatgcgcgaaatgatggatcgcgtacgtggt
caggagcgcctgatcatgaagctgtgcgttgagcagagcaagatgccgaagaaaaacttc
atcaccctgtttaccggcaacgaaaccagcatcacctggtttgacgccgcgctggccatg
ggcaaaccctggggcgaaaagctcaaggatatgcgtgaagacgtggagcgcagcctgcag
aagctgcaccagattgaagaagagaccggtctgaccatcgagcaggtcaaagacatcaac
cgtcgtatgtccatcggcgaggccaaagcgcgtcgcgcgaagaaagagatggttgaggct
aacctgcgtctggttatctccatcgccaagaagtacaccaaccgcggcctgcagttcctg
gatctgatccaggagggcaacatcggtctgatgaaggcggtcgataagtttgagtaccgt
cgcggctacaagttctccacctacgcgacctggtggatccgtcaggcgatcacccgctct
atcgccgatcaggcgcgcaccatccgtatcccggtgcatatgattgagactatcaataag
ctcaaccgtatttcacgtcagatgctgcaggagatggggcgtgagccgacgccggaagag
ctggccgagcgcatgatgatgccggaagacaagatccgcaaggtgctgaagattgccaaa
gagccgatctccatggaaacgccgatcggtgacgatgaagattcgcatctgggtgacttt
atcgaagataccactctggagctgccgctggactccgcgacctcggaaagcctgcgctcc
gctacccgcgacgtgctggccgggctgaccgcccgcgaggcgaaagtcctgcgcatgcgc
tttggtatcgatatgaataccgaccacaccctggaagaggtcggcaagcagttcgatgtt
acccgcgagcgtatccgccagatcgaagccaaggcgctgcgtaagctgcgccacccgagc
cgctctgaagtcctgcgcagcttcctggacgactaa
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