Edwardsiella piscicida C07-087: ETAC_05585
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Entry
ETAC_05585 CDS
T02509
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ETAC_05585 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etc03400
]
ETAC_05585 (sbcB)
Enzymes [BR:
etc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ETAC_05585 (sbcB)
DNA repair and recombination proteins [BR:
etc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ETAC_05585 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ETAC_05585 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ETAC_05585 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AGH73242
LinkDB
All DBs
Position
complement(1281942..1283363)
Genome browser
AA seq
473 aa
AA seq
DB search
MSKAAPTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDA
VMITGITPQTALAQGVCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDP
YAYSWQNGNSRWDLLDVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDA
MADVYATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNT
SLIAPLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHI
NKCPVLAPEKTLLADNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDV
DSQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPTTLDESE
RRRWQQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELVG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaggctgcgcccacctttctgtttcacgactatgaaaccttcggtcagcatccg
gcgcgggatcgtcccgcacagttcgccggcgtgcgcaccgacgccgacttcaacatcatc
gaagagccccaagtgttttactgccgtctggccgatgattacttgccccagcccgacgcg
gtgatgatcaccgggatcaccccgcagacggcgctggcgcagggggtttgtgaagccgaa
ttcgccgagcgtatccaccagatgttcagcgtgccgggcacctgcgtcgtgggctataac
aacatccgcttcgacgatgaggtgagccgcaacctgttctatcgcaacttctttgacccc
tacgcctacagctggcaaaacggcaactcgcgctgggatctgctggatgtggtgcgcacc
tgctacgccctgcgccccgaggggatcgtctggccagaaaacgaacaggggctacccagc
ttcaagctggagcacctgtcccaggccaacggcattgagcacagcaacgcccacgacgcc
atggccgatgtctacgccaccatcgcgctggccaagcgagtcaaacaggcccagccgcgg
ctattcgactatctgttccagctgcgcaacaaaaaccgggtagcgcagcttatcgacatc
gctgcgatgactcccctggtgcatgtctccggcatgttcggcgccctgcgcggcaacacc
agcctgatcgcaccgctggcctggcatcccgagaacaaaaacgcggtgatcgtctgcgat
ctggacagcgatatcaccccgctgctgaccctggacgccaccgccctgcgcgaacggctc
tacacgccgcgcagcgagctgggcgacgccgcgccggtgcccatcaagctggtccacatc
aataaatgtccggtgctggcgccggagaaaaccctgctcgcggacaacgccgcccgcctg
gggctcgatcgccagcgctgccgggataatttagccctgctacagcagcacagcgagatc
cgtgacaaggtggtatccctgtttgccgatgcgccgcccttcccaccgtcggacgacgtg
gacagccagctgtacgacggcttcttcagcgacgccgatcgccaggcgatgcaaattatt
cgcgccacccaaccgcagaacctgccggcgctggatctgcgcttcagcgatccgcgcatc
acgccgctgctgtttcgctaccgcgcccgtaactacccgacaacgctggatgagagcgag
aggcgccgctggcagcagcatcgccaggccatgctgacgccgcagcgcgtacaggattat
ctacagacgctggaaatgctgtacaaccgctatgaggatcagccgcagaagctgacgctg
ctgcgggcgctgtttgattatgcccgtgaattagtaggataa
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