Edwardsiella tarda: ETAF_0366
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Entry
ETAF_0366 CDS
T02091
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
etd
Edwardsiella tarda
Pathway
etd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAF_0366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etd03019
]
ETAF_0366
03009 Ribosome biogenesis [BR:
etd03009
]
ETAF_0366
Enzymes [BR:
etd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETAF_0366
Messenger RNA biogenesis [BR:
etd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETAF_0366
Ribosome biogenesis [BR:
etd03009
]
Prokaryotic type
rRNA helicases
ETAF_0366
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
Cas3-like_C_2
CMS1
UTP25_NTPase-like
AAA_30
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ADM40490
UniProt:
A0A0H3DPN2
LinkDB
All DBs
Position
436185..438050
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AA seq
621 aa
AA seq
DB search
MAEFETTFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIDPSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAE
HQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNI
ERTMKLTIPEVELPNAELLSTRRLAKFAARVQQQLESSDLDQYRALLAKLQPEDEQDMET
LAAALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRPRRERREVGDMELYRIEVG
RDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTHFTRTRILNKP
MNMQLIGDAPAREQRRERSGERGGERRSFGGRDGGRDGDRRSFGGQRRFSDDRRGDRGFN
RDSRSTRSDDNGHSRRRFNDA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttcgaaactacttttgctgacctggggttagctgcacctattattgaagcc
ctgaatgatttgggctatgagaagccgtcaccgattcaggcggcctgtattcctcacctg
ctgaacgggcgcgacgtgctgggcatggcgcagaccggcagcggtaaaacggcggcgttc
tctctgccgctgctgaacaatatcgatccgtcgttgaaagcaccgcaggtactggtgctg
gcgccgacccgtgagctggcggtacaggttgctgaagctatggcggatttttctaagcat
atgcacggcatcaacgtggtcgccctgtacggtggccagcgctatgacgttcagctgcgc
gccctgcgtcaggggccgcagatcgtggtcggtacgccgggccgtctgctggatcacctg
aagcgcggtacgctgagcctgaccagcctgcgtggcctggtgctggatgaagccgacgaa
atgctgcgtatgggctttattgaagacgttgagaccatcatggcgcagatcccggcggag
catcagaccgctctgttttctgccaccatgccggaggctatccgtcgtattactcgtcgc
tttatgaatgagccgcaggaagtgcgcattcagtccagcgtgacgacccgcccagacatc
agccagagctactggacggtgtatgggatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagactttgatgcggcgatcatcttcgtgcgcaccaagaatgccaccctggaa
gtggccgaagcgctggagcgtaacggctacagcagcgcggcgctgaacggcgacatgaac
caggcgctgcgtgagcagaccctggagcgtctgaaagacggtcgtctggatatcctgatt
gcgaccgacgtggctgcccgtggcctggacgtcgatcgcatcagcctggtcgttaactac
gatatcccgatggatgccgaatcctacgtgcaccgtatcggtcgtaccggccgcgccggc
cgtgccggtcgtgcgctgctgttcgttgataaccgtgagcgtcgtctgctgcgcaacatt
gagcgcaccatgaagctgaccattccggaagtcgaactgccgaacgccgagctgctcagc
actcgccgtctggccaagtttgccgcccgtgttcagcagcagctggagagcagcgatctg
gatcagtaccgtgcgttgctggctaagctgcagccggaagacgagcaggatatggaaacg
ctggccgctgcgctgctgaagatggcgcagggcgaacgtccgctgatcctgccgccggac
ccggttgttgagcgtcgtccgcgtcgtgaattccgcgagcgcgatgagcgcggcggcgat
cgtccgcgtcgcgagcgtcgcgaagtcggtgatatggagctgtatcgcatcgaagtgggt
cgtgacgatggcgttgaagttcgtcatatcgtgggtgctatcgctaacgaaggcgatatc
agcagccgctatattggcaacattcgtctgttcggttcgcactccaccatcgagctgccg
aaaggcatgccgggcgatctgctgacgcactttacccgtacccgcatcctgaacaagccg
atgaacatgcagctgatcggtgatgcgccggcgcgtgagcagcgtcgcgagcgcagcggc
gaacgtggtggtgagcgtcgcagcttcggtggccgcgacggcggtcgtgatggcgatcgc
cgcagctttggcggtcagcgtcgtttctctgacgatcgccgcggcgatcgcgggttcaat
cgcgatagtcgtagcacccgctcagacgacaacggccacagccgtcgccgttttaacgat
gcgtaa
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