Edwardsiella tarda: ETAF_1088
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Entry
ETAF_1088 CDS
T02091
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
etd
Edwardsiella tarda
Pathway
etd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ETAF_1088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etd03400
]
ETAF_1088
Enzymes [BR:
etd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ETAF_1088
DNA repair and recombination proteins [BR:
etd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ETAF_1088
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ETAF_1088
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ETAF_1088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ADM41207
UniProt:
A0A0H3DTC9
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All DBs
Position
complement(1260520..1261947)
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AA seq
475 aa
AA seq
DB search
MKNRSIQNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQP
DAVMITGITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFF
DPYAYSWQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAH
DAMADVYATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRG
NTSLIAPLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLV
HINKCPVLAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSD
DVDSQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDE
NERRRWQQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaacagaagcatacaaaatacattcctctttcacgactatgaaaccttcggtcag
catccggcgcgggatcgtcccgcacagttcgccggcgtgcgcaccgacgccgacttcaac
atcatcgaagagccccaggtgttttactgccgtctggccgatgattacctgccccagccc
gacgcggtgatgatcaccgggatcaccccgcagacggcgctggcgcaggggggttgtgaa
gccgaattcgccgagcgtatccaccagatgttcagcgtgccgggcacctgcgtcgtaggc
tataacaacatccgcttcgacgatgaggtaagccgcaacctgttctatcgcaacttcttt
gacccctacgcctacagctggcaaaacggcaactcgcgctgggatctgctggatgtggtg
cgcacctgctacgccctgcgccacgaggggatcgtctggccagaaaacgaacaggggcta
cccagcttcaagctggagcacctgtcccaggccaacggcattgagcacagcaacgcccac
gacgccatggccgatgtctacgccaccatcgcgctggccaagcgagtcaaacaggcccag
ccgcggctattcgactatctgttccagctgcgcaacaaaaaccgggtagcgcagcttatc
gacatcgctgcgatgactcccctggtgcatgtctccggcatgttcggcgccctgcgcggc
aacaccagcctgatcgcaccgctggcctggcatcccgagaacaaaaacgcggtgatcgtc
tgcgatctggacagcgatatcaccccgctgctgaccctggacgccaccgccctgcgcgaa
cggctctacacgccgcgcagcgagctgggcgacgccgcgccggtgcctatcaagctggtc
cacatcaataaatgtccggtgctggcgccggagaaaaccctgctcgtggacaacgccgcc
cgcctggggctcgatcgccagcgctgccgggataatttagccctgctacagcagcacagc
gagatccgtgacaaggtggtatccctgtttgccgatgcgccgcccttcccaccgtcggac
gacgtggacagccagctgtacgacggcttcttcagcgacgccgatcgccaggcgatgcaa
attattcgcgccacccagccgcagaacctgccggcgctggatctgcgcttcagcgatccg
cgcatcacgccgctgctgtttcgctaccgcgcccgtaactacccggcgacgctggatgag
aacgagaggcgccgctggcagcagcatcgccaggccatgctgacgccgcagcgcgtacag
gattatctacagacgctggaaatgctgtacaaccgctatgaggatcagccgcagaagctg
acgctgctgcgggcgctgtttgattatgcccgtgaattagtaggataa
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