Edwardsiella tarda: ETAF_2465
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Entry
ETAF_2465 CDS
T02091
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
etd
Edwardsiella tarda
Brite
KEGG Orthology (KO) [BR:
etd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
etd03009
]
ETAF_2465 (srmB)
Enzymes [BR:
etd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETAF_2465 (srmB)
Ribosome biogenesis [BR:
etd03009
]
Prokaryotic type
rRNA helicases
ETAF_2465 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADM42568
UniProt:
A0A0H3DV91
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All DBs
Position
2798174..2799520
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AA seq
448 aa
AA seq
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MTATNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PALQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHA
EIFNTNQDMVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRW
RRQTLLFSATLESDAVHDFADRLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLC
SLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVN
VLVATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLL
GKVSRYVQEPLKSRVVDELRPETKAPSLKNKGKPSKKVQAKRAQKKADEQKKKVKTKVRH
RDSKNVGKRRQSNAQSTPASAGTEDSGE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaccaacttttccgaactcgaactcgacgagcgcctgctcgacgccctgcgc
gacaaaggctatgagcgcccgaccgccatccagatcgccgccatcccgcccgccatggac
ggacgggacgttttgggttccgcaccgacgggaaccggcaagaccgccgccttcctgctg
cccgcgctgcagcacctgctcgacttcccgcgtaagaagtccggcccgccgcgcgttctg
atcctcacgccgacccgcgaactggccatgcaggtggccgatcaggcccgggagctggcg
cgtcacaccagcctggacatcaccaccattaccggcggcgtttcctatattaaccacgcc
gagatctttaacaccaaccaggatatggtggttgcaacgccggggcgcctgctgcagtac
atcaaagaagagaactttgactgccgggcggtagagaccctgatcctcgatgaagccgac
cgcatgctggacatgggcttcgccagcgacatcgaaaccgtctccgccgaaacccgctgg
cgccggcagaccctgctgttctccgccaccctggagtccgacgcggttcacgactttgcc
gatcgcctgctcaacgatcccgttgacgtcagcgccgagccaccgcgccgtgagcgtaag
aagatccagcagtggtactatcgcgccgatagcctgaaacacaagaccgccctgctgtgt
agcctgctgcgccagccggacgtcaccaagtccgttatctttgtgcgcaagcgtgagcgc
gtgcatgagctggtcacctggctgcatcaggccggtatccaggcctgcttccttgagggt
gaaatggtgcaggccaagcgtaacgaggccattaagcgcatgctggatggccgggtcaac
gtgctggtcgccaccgacgtcgccgcccgcggcctggatattccggatatcagccacgtg
ttcaactttgacatgccgcgcagcgccgatgtctacctgcaccgcatcgggcgtaccgcc
cgcgccgggcgtaaggggaccgcgatctccctgatcgaggcgcacgaccagctgctgctc
ggcaaggtgagccgctatgtgcaagagccgctgaagtcacgcgtcgtcgatgagctgcgt
ccggagaccaaggcgccgagcctgaagaacaagggtaagccgtcgaagaaggtacaggcc
aagcgagcgcagaaaaaagccgacgagcagaagaaaaaggtcaagaccaaagtgcgccac
cgcgacagtaaaaacgtcggtaaacgccgtcagtccaacgctcagagcactcccgccagc
gcaggcactgaggatagcggcgaataa
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