Edwardsiella anguillarum: ETEE_0103
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Entry
ETEE_0103 CDS
T03245
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ete
Edwardsiella anguillarum
Pathway
ete03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ete00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETEE_0103 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ete03019
]
ETEE_0103 (rne)
03009 Ribosome biogenesis [BR:
ete03009
]
ETEE_0103 (rne)
Enzymes [BR:
ete01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ETEE_0103 (rne)
Messenger RNA biogenesis [BR:
ete03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETEE_0103 (rne)
Ribosome biogenesis [BR:
ete03009
]
Prokaryotic type
rRNA processing factors
ETEE_0103 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
potato_inhibit
Motif
Other DBs
NCBI-ProteinID:
AIJ06588
UniProt:
A0A076LJ50
LinkDB
All DBs
Position
87907..91092
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQIPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLA
LSILRLIEEEALKENTREVHAIVPVPVASYLLNEKRDAVSAIEKRQPDVRVIVVPNEQMQ
TPHYAVMRVRKGEETHTLSYKLPQLHEAEACGEEEVPAERKRPEQPALAAFSLDVAAPPI
DAAQDKPVAADVAPTERPQPIADARPGLFGRLVASLKGIFAGDAAPAPVQEETPAVSAER
PREESRSSQERRGRRQNPRRERGERGDRPERSERPERGERPERGERPERANRDGRENRDE
QRRGRRQAQPTPATEGGADENAQQREEQQQRREQRNERQRRRQEDKRQAQQEVKALDAAA
QPDEEIAEESVPAQRRQRRQLSQKIRIGDSTPAVVSADPEAAVAPIADASVPALPAVNAQ
PQESAAAEEDNAPRHENGMPRRSRRSPRHLRVSGQRRRRYRDERYPQQSPMPLTLAVYSP
EMASGKVWISYPVAAPAAAETSALETPHVMEESTAALAIEMPAAVPAETARPEVIAEAVV
NDAAADEPVVQAPAILAPAAAVETQACDAIAQQPSPVVTDESATHAVCAAAAPTQEEALP
ALAQAEAQAAEAELKAEAEAEASVAAPLVPPSAMAPSDTHEHGRASAPMTTAPAPAYVAP
AAVVSTWVRPEYDFHGRGAAGADAASNQAAAPATKPVMPQE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaggagttgcgtgtcgcccttgtggat
ggccagcgactgtacgatctggatattgaaagcccgggtcacgaacagaagaaagcaaac
atttacaagggtaaaatcacccgaattgaacccagtctggaagccgcctttgttgactac
ggcgccgaacgacacggtttcctgccccttaaagagatcgcccgcgaatattttcccagc
aactactccgcccacggtcgtcccaacattaaggacgtgctgcgtgaagggcaggaggtc
attgttcaggtcgataaggaagagcgcggcaacaaaggggctgcgctgaccacctttatc
agcctggcgggcagctatctggtgctgatgcccaacaacccgcgcgccggcggtatctcc
cgccgtatcgagggtgatgaccgcaccgagctgaaggaagcgctctcctctctgcagatc
cccgacggcatggggctgatcgtccgcaccgccggcgtcggcaaatccgccgaagccctg
cagtgggatctctccttccgcctgaagcactgggatgccatcaagaaagccgccgaaggc
cgccctgccccgttcctgatccatcaggaaagcaacgtcatcgtccgcgccttccgtgac
tatctgcgcccggacatcggcgaaatcctgatcgacaatccgaagatcctcgacctggcc
aagcagcatatcgccgccctgggtcgtccggacttcagcagcaaaatcaagctgtacacc
ggggagatcccgctgttcagccactatcagatcgagtcacagatcgagtctgccttccag
cgtgaagtccgcctgccctccggcggctctatcgttatcgacagcaccgaggcgctgacc
gccatcgatatcaactccgcccgcgctacccgcggcggcgatatcgaagagaccgcgttc
aacaccaacctggaagccgccgatgaaatcgcccgccagctgcgtctgcgcgacctgggc
ggtctgatcgtgatcgactttatcgatatgaccccggtgcgccaccagcgcgaggtcgaa
aaccgcctgcgcgacgccgtgcgtcaggatcgcgcccgtattcagatcggtcgaatctcc
cgctttggcctgctggagatgtcccgccagcgtctcagcccctctctgggcgaatccagc
caccatgtctgcccgcgctgtaatggcaccggtaccgtgcgtgacaacgaatcgctggcg
ctgtccatcctgcgcctgatcgaagaggaggcgctgaaagagaatacccgtgaagtgcac
gccatcgtgccggtaccggtcgcctcctatctgctgaacgagaagcgtgacgccgtaagc
gccattgagaaacgccagccggacgtgcgcgtcatcgtggtgcctaacgagcaaatgcag
accccgcactacgccgttatgcgggtgcgtaaaggcgaagagacccataccctgagctac
aagctgccacagctgcacgaagcggaagcctgcggtgaggaagaagtaccggcagagcgc
aagcgtccggagcagccggcgctggccgcctttagcctggatgtcgccgcaccgccgatc
gacgccgcacaggataagcctgtcgctgccgacgtcgcgccgaccgagcgcccgcagccg
atagccgacgcccgtccgggactgtttggtcgcctggtcgcctccctgaaagggatcttc
gccggcgacgccgcaccggcgccggtgcaggaagagacgcctgccgtcagcgctgagcgc
ccgcgtgaagagagccgttcctcgcaggagcgccgcggtcgtcgccagaacccgcgccgt
gaacgcggtgagcgcggcgatcgtccggagcgcagtgagcgtccagagcgcggtgagcgt
ccggagcgcggcgagcgcccagagcgtgcgaaccgcgacggccgtgaaaaccgcgacgaa
cagcgccgtggccgccgtcaggctcagccgacgccggcgacagagggcggcgcagatgag
aatgcccagcagcgcgaagagcagcagcagcgccgcgaacagcgcaacgagcgtcagcgt
cgtcgtcaggaagataagcgccaggcccagcaagaggtcaaggcgctggacgccgccgca
cagcctgatgaggagatcgcagaggagagcgtaccggcccagcgccgtcaacgccgtcag
ctgagccagaagatccgcatcggcgatagcacgccggcggtcgtcagcgccgacccagaa
gccgccgtggcgccgattgccgacgcgagcgttccggctctgcctgcggtcaacgcacag
cctcaggagagcgccgcagcggaagaggataacgcgccgcgccatgagaatggcatgccg
cgccgctcccgtcggtcaccgcgtcacctgcgcgtcagcgggcagcgccgtcgccgctat
cgcgacgagcgttatccgcagcagtcaccgatgccgctgacgctggcggtatactctccg
gagatggcctctggcaaggtatggatcagctatcctgtcgccgccccggcggccgccgag
accagcgcgctcgaaacgccgcacgtcatggaggagagcaccgccgcgctagcgatagag
atgcccgccgccgtaccggctgaaaccgcgcgtccggaggtcatcgccgaggccgtcgtc
aacgacgccgcggccgacgaaccggtggtgcaggcgccggcgatcctcgccccggccgct
gccgttgagacgcaggcctgcgacgcgatcgcgcagcagccgtcgccggtagtcactgac
gagagcgccactcacgccgtctgtgccgccgccgcaccgacgcaggaagaggcactgcct
gcattggcccaggccgaagcgcaggctgctgaagcggaactcaaagccgaagccgaagcc
gaagccagcgtagccgcccccctggtaccgccgtcggcaatggccccgagcgatacgcac
gaacacggtcgcgccagcgcgccgatgaccacggcaccggcgccggcctatgtcgcaccg
gcagcggtagtcagcacctgggttcgcccggagtatgacttccacggccgcggtgccgcc
ggtgcagacgctgcgtccaatcaggccgcagcgccagccacgaaaccggttatgccgcag
gagtaa
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