Echinops telfairi (small Madagascar hedgehog): 101639304
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Entry
101639304 CDS
T08707
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf04120
Ubiquitin mediated proteolysis
etf04137
Mitophagy - animal
etf04141
Protein processing in endoplasmic reticulum
etf05012
Parkinson disease
etf05014
Amyotrophic lateral sclerosis
etf05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101639304 (PRKN)
04120 Ubiquitin mediated proteolysis
101639304 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
101639304 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
101639304 (PRKN)
05014 Amyotrophic lateral sclerosis
101639304 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
101639304 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
etf04131
]
101639304 (PRKN)
04121 Ubiquitin system [BR:
etf04121
]
101639304 (PRKN)
03029 Mitochondrial biogenesis [BR:
etf03029
]
101639304 (PRKN)
Enzymes [BR:
etf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
101639304 (PRKN)
Membrane trafficking [BR:
etf04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
101639304 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
101639304 (PRKN)
Xenophagy
Other xenophagy associated proteins
101639304 (PRKN)
Ubiquitin system [BR:
etf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
101639304 (PRKN)
Mitochondrial biogenesis [BR:
etf03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
101639304 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
Rad60-SLD
IBR
Rad60-SLD_2
Dsc3_N
Ubiquitin_5
Crinkler
Motif
Other DBs
NCBI-GeneID:
101639304
NCBI-ProteinID:
XP_045150397
LinkDB
All DBs
Position
Unknown
AA seq
463 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVRQDTSISQLKEAVAKRQGVPADQLRVIFAGKELRNEWTLQNCD
LEQQSIVHVVQRPQSQPLEPEPTRGARPRNTAWGVGREPESLTRVNLGNSILPADSVGLA
VVLNDDRSAPSPSVSAGGRTYNSFYVYCKGPCQAVQPGKLRVQCGTCKQATLTLTQGPSC
WEDVLIPNRMSGECQSPNCSGTRAEFFFKCGAHPTSDNETSVALNLFTTNSRDISCITCT
DIRSPVLVFQCNHRHVICLDCFHLYCVTKLNDRQFVHDPELGYSLPCVAGCPNSLIKELH
HFRVLGEEQYNRYQKYGAEECVLQLGGVLCPGPGCGAGLLPETGVRKVTCEGGNNLGCGS
VFCRDCKEAYHEGECAVQAASSGAVSQGYRVDEKAAEQARWEEASKKTIKETTKPCPRCH
VPVEKNGGCMHMKCPQPQCKFEWCWNCSLEWNRTCMGDHWFDV
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagccatggctttcccgtggaggtccgtcaggac
accagcatctcccagctcaaggaggcggttgccaagcgccagggggttccagctgaccag
ctgagagtgatcttcgccgggaaggagcttcggaacgagtggactctgcagaactgtgac
ctggagcagcaaagcatcgtccacgttgtgcaaagaccccagagccaacctctggaacct
gagccgaccagaggggcccgccccaggaacaccgcgtggggcgttgggagggagcctgag
agcttgacccgggtgaacctgggcaactccatcctccctgcagactcggtgggcctggct
gtggtcctgaatgatgaccggagtgcaccctcaccgtctgtgagcgcaggtggacgcacc
tacaacagcttctatgtgtattgcaaaggcccctgtcaagcggtgcagcccggaaaactc
agggtgcagtgcggcacctgcaagcaagccacgctcaccttgacccagggcccgtcttgc
tgggaagatgtcctcattccaaaccggatgagtggggaatgccagtctccaaactgctca
gggacaagggctgaattcttctttaagtgcggagcgcaccctacgagtgacaatgagact
tcagtggccctgaacctttttaccaccaatagtcgagacatcagttgcatcacgtgtacc
gacatcaggagccctgtcctggttttccaatgcaaccatcgccacgtgatttgcttagac
tgtttccacttgtactgcgtgaccaaactcaatgaccggcagtttgtccatgaccctgag
ctcggctactccctgccgtgtgtggctggctgtcccaactccctgattaaagagctgcat
cacttcagggtgctcggagaagagcagtacaaccggtaccagaaatacggggctgaagag
tgtgtcctacagctgggcggtgtgctgtgccccggccctggctgtggggcgggcctgctg
ccggagaccggtgtgaggaaagtcacctgtgaaggaggcaacaacctgggctgcgggagt
gtcttctgccgggactgtaaggaggcctaccacgaaggggaatgcgctgtccaggctgcg
agctcaggggctgtgtctcagggctacagggttgatgagaaggcagcggagcaagcacga
tgggaagaggcctcaaaaaaaaccatcaaggagaccacgaagccttgtcctcgttgccac
gtgcctgtggaaaaaaatggtggatgcatgcacatgaagtgtccccagcctcagtgcaag
ttcgagtggtgctggaactgcagtttggaatggaaccgcacgtgcatgggtgaccactgg
ttcgacgtgtag
DBGET
integrated database retrieval system
