Echinops telfairi (small Madagascar hedgehog): 101640201
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Entry
101640201 CDS
T08707
Symbol
SHOC1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etf03036
]
101640201 (SHOC1)
Chromosome and associated proteins [BR:
etf03036
]
Eukaryotic type
Meiosis-specific proteins
Others
101640201 (SHOC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
SHOC1_2HhH
Motif
Other DBs
NCBI-GeneID:
101640201
NCBI-ProteinID:
XP_004711092
UniProt:
A0ABM0IYW9
LinkDB
All DBs
Position
Unknown
AA seq
1504 aa
AA seq
DB search
MFSPLKYHAIDYVFENVVRKRLTRNALLLQTPSCLFQDESHAGVTNDKFRKPWTRVTAVS
VGGLTDHSLLDQWKSSLSVEDFLEKKTVTRMPTQINCESEEVVPSSNPNSQTEVEEADLY
ACEDYREAFAVVNCVEKCPALQTQIQDFFIDEEEISVNEMMSHRSNLPTLNSQSRRLKLF
SVESPLSDFKEQMSTKSNFSRECFSFQENMEVNEKDEFYKYKENFCLEKLEDTVGXNDSS
DLSVESEFLISTSLNQDVDNPSFPELNEPLYLMPERINYADKNENTYQRDLTTKGRSDTV
DVTCSPKDILTVQSLGEPEYSERGKLQMSLTPLHRTSQHSSVRSLNTRLQIFPFSPIRKI
NLITTEESANKYWLVWCPLESCRSVLKQLMLTVPRTHVPRRHYSVTCFKKAFSVEDESLV
IRPLKGEWWKQVALDLVMTETLEHLNTDLSHICLSSDNTKMEIIFPTKLLQLESWLEHTS
YSLPIVCIIEKSENDHLSLPQKSLPLAKEVPALGFPDKCISVKRSSKEETPKNDPELVDR
IVQKTENEDHIDLDCTVLCIDSCSSSGIEEVSFECKRQQNDSDLLSDFIMLRNKYKICSS
KTDVTNSDENDDEALPLTPQEESPNVCTNKTLEKINQGRADHIIEIQASASQSRAYCFLE
AAATPILRKLACLGVLPADNWKFATIIFDQSRFLLKEQEKVISDSSHLGINDERETTFKH
AALLHILVTTRDILLTCSLDTALGYLSNAKDVYKSILGSCLDDIWRQLEIVQFIRKRNPE
TNYKIQKLQCQILRWIQIQEQIKVLIIIRMDSDGEKHLLIKILSKIEGLILTVFHSNNRK
KSLGSTGVLNGSCSCVVIHNQYIEADFPWSNFSFVVEYNYSENSYWTKHCEKLNIPYMAF
KTVLPDTVLKRSNLLDRFSGFLLEIQIPYVFFASEGILNTPEILQLLESNYDITLVERSC
SESLKLFGNIEHYVVVTIDEHTAIILQDLEELNYEKASDIIIMRLMALSFQYSCCWIILY
SKNTLDSEYHLTEKTLHHLALIYAALGSSALKSEQLDVKPIIVAGREEAALMIRQIADHN
LMTSKRKPHEWLDKSWLDVSPSKEEMYLLDFPCISPLVAQLMLSKGLSLHWILIASLCQL
QKLLPEVPEKVLKHFCSITSLFQINSSSMTKSPQIPSPQEKMNHPSAYTSQSLTFGSSDA
VIQKRDDSYQYSDFGETVQEDTNTVSNYSPSLMGLREKPCISPSVDSYSQTRSWKGSSYD
RNVVQNNPFLINTESKKETYHPFLNENDSESDVFGLGLTQMDCETRLLPSFTGQKIAPNF
INYQEKRPHEAKGSTNKEVSSPIFLPEGSQFPLCWNVNKNKCEQNNSFNLQDDAYDKWYS
QKSDLFTNQQKYPSEELEDLTYEGSKPGTEQSSWRELPSSPSLDLFSSSNANVNLKEVDS
LYFYQRTGKHVGQKRYSESSPGAEVLGSLPGNVLSSIPQRKKRRLVYEKVPGRADGQTRL
RFYE
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgccactcaaatatcatgcaatagactacgtatttgagaatgtagttagaaag
agacttaccagaaatgctttattgcttcaaactccttcctgtttgtttcaagatgaaagt
catgcaggggtgactaatgataaatttaggaagccatggacgagagtcacggctgtttca
gttgggggactgacagatcactcactcttggatcaatggaaatcaagtctctctgtggaa
gatttccttgagaaaaaaacagttacaagaatgcctacccagattaattgtgaatctgag
gaagttgttccaagttcaaacccaaactcccaaactgaagtggaggaagctgatttgtat
gcctgtgaagactacagagaagcctttgcagtagtcaactgcgtcgaaaagtgccctgcg
cttcagacacagatccaagatttttttattgatgaggaagaaatttctgtaaatgagatg
atgtcccacagaagtaatttaccaactttgaatagtcaatcgaggagactaaaactgttc
tcagtagagagtcctctttcagatttcaaagaacagatgtctacaaaatctaacttttcc
agggaatgtttctcttttcaagagaatatggaagttaatgagaaagacgaattttacaaa
tacaaagagaacttttgcctggagaaactagaggacacagtaggttaaaatgattcatca
gatttgtctgttgagagtgaattcttgatatctacaagcctcaatcaagatgttgataat
ccatcattcccagaactgaatgagccattatacttaatgccagaaagaataaattatgca
gataaaaatgaaaacacttaccaaagagatcttactaccaagggtagaagtgatactgtg
gatgtaacatgcagtcccaaagacattttgacagttcaaagtctgggtgaaccagagtac
agtgaaagaggaaagttacaaatgtcattaactcctctacacagaacaagccaacattcc
tcagtgcgctcattaaatacaaggcttcagatttttccattttctcccattcgtaaaatt
aatttaattaccaccgaagaatcagctaataaatattggctggtatggtgtccattagaa
agctgccgaagtgttttgaaacaattgatgcttacagtaccaaggactcatgtgcccagg
agacattattcagttacgtgttttaaaaaggcgttttctgttgaagatgaaagccttgtg
attcgtcctctaaagggagaatggtggaaacaagtagcactagatctggtaatgacagaa
accttggaacatctaaatacagatttgagtcacatttgtctatcttctgacaatactaaa
atggagatcatttttcctacaaaattgcttcaattggaatcatggctagaacatacaagt
tattctttacctattgtatgtattattgagaaatctgaaaatgatcatttatcactgcca
caaaaaagtctacctcttgcaaaagaagtgccagctctgggttttcctgataaatgtatc
tctgttaaaagatcatcgaaagaagagaccccaaagaatgatccagagttagttgatagg
atagtccaaaagacagaaaatgaagatcacattgaccttgactgcacagtactgtgtatt
gactcatgctcatcttcaggaattgaagaagtgtcctttgaatgtaaaagacaacagaat
gattcagaccttttgagtgactttattatgttacgaaataaatataagatttgctcctca
aagacagatgtcacaaatagtgatgaaaacgatgatgaagcacttcctttgactcctcaa
gaagaaagtcctaatgtttgtactaataaaaccctagagaaaataaatcaaggaagagca
gatcatatcattgaaattcaagcatcagctagccaatcccgagcatactgtttcttagaa
gcagcggctactcctatcttaagaaagcttgcatgcctcggtgtgctccctgctgataat
tggaaatttgccactattatctttgatcagtcaaggttccttttaaaggaacaagaaaaa
gtaataagtgattctagtcacttaggtataaatgatgaaagagaaacgacattcaagcat
gctgctcttttacatattctggtaacaactagagatatccttttaacgtgtagcttggac
acagcattggggtatttgtcaaatgccaaggatgtgtacaaaagcattttaggctcctgc
ttggatgacatttggaggcagctggagattgtgcagtttattaggaaaagaaatcctgaa
accaactacaagatacaaaaattacagtgtcaaatactaaggtggatccaaattcaagag
caaattaaggtactaataataataagaatggactcagatggtgaaaaacatttactcatt
aaaatccttagcaaaatagaaggtttaatattgactgtctttcattcaaataacagaaaa
aaatccctgggatctacaggtgttttaaatggttcctgttcctgtgtagttatacataat
caatatattgaggctgatttcccgtggagtaatttctcatttgtggttgaatacaattat
tcagaaaactcctattggactaaacactgtgagaagttgaatattccttatatggctttt
aaaacagttcttccagacacagttttaaagagaagcaatttgctggatagatttagtggt
tttctattggaaattcagattccatatgtgttttttgcatctgaaggaattcttaatact
ccagaaatacttcagctgttagaatccaattacgatatcacactagtggagagaagctgc
agtgagtcattgaaactctttggaaatatagaacattatgtagtggtgacaattgatgaa
cacactgccataattttgcaggatttagaagaattgaattatgagaaggcatcagatatc
atcatcatgagactaatggcactatcatttcagtacagctgttgttggataattttatat
tcaaaaaacaccttggattcagagtatcaccttacagaaaagacacttcatcacctggcc
ctaatttatgcagctttgggttcatctgccctaaaatctgaacaactggatgtaaagcct
ataattgtagcaggaagagaagaggctgcattgatgattcggcaaattgctgaccacaat
ttaatgacctccaagagaaagcctcatgaatggttggataaatcctggcttgacgtttca
ccctccaaggaagaaatgtacttacttgattttccatgtatcagtccattggtggctcag
ctcatgttaagtaaagggctttcattgcactggatactaatagcaagtctttgccaactt
cagaagctcctccctgaagttccagaaaaagtattaaagcatttttgtagcatcacgtcc
ttattccagattaattcttcttccatgacaaaatcacctcaaattccatcacctcaggaa
aagatgaatcatcctagtgcctatacttctcaaagtttaactttcggttcttcagacgct
gtcattcagaaacgtgatgactcttatcaatattcagactttggagagacagtccaagaa
gacacaaatactgtttctaattatagcccttcccttatgggactaagggaaaagccatgc
atttcaccatctgtggattcttatagtcagacccgctcctggaaaggctccagttatgac
agaaacgtagtgcagaataacccttttctaattaatacagaatcaaagaaagagacttat
catccctttctaaatgaaaatgattcagagtcagatgtctttggtttgggactaacacaa
atggattgtgaaaccagactgttaccatcttttactggtcagaaaattgctcctaacttt
ataaattatcaggaaaagaggccacatgaagcaaaagggtccacaaataaagaagtatct
tcccctatctttttaccagaaggctcacaatttccactttgttggaatgttaataaaaat
aaatgtgagcagaacaactcattcaacttacaagatgatgcatatgacaaatggtactcc
cagaaaagtgatttgttcactaaccagcaaaaatatccatcagaggagttagaagactta
acatacgaaggttcaaaaccagggactgaacaatcttcctggagagagttaccatcttcc
cccagtttggatttgttttcttcatctaatgcaaatgtaaatctaaaggaagttgacagc
ctgtatttctatcaaagaactggaaagcatgtaggacagaaaaggtactcggaatcttcg
cctggtgcagaagtcctgggatcattaccaggtaacgtactatccagtataccacaacgc
aaaaaacgccgtttagtgtatgaaaaagtccccggtagagctgatggacaaacgcggctg
aggttttatgaatga
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integrated database retrieval system
