Echinops telfairi (small Madagascar hedgehog): 101640702
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Entry
101640702 CDS
T08707
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101640702 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etf03021
]
101640702 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
etf03019
]
101640702 (SUPT5H)
Transcription machinery [BR:
etf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
101640702 (SUPT5H)
RNA polymerase I system
101640702 (SUPT5H)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
101640702 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Motif
Other DBs
NCBI-GeneID:
101640702
NCBI-ProteinID:
XP_004710375
LinkDB
All DBs
Position
Unknown
AA seq
1080 aa
AA seq
DB search
MSDSEDSNFSEEEESERSSDAEEAEVEEERRSAAGSEKEEEPEEEEEEEEYDEEEEEEDD
DRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGAR
RLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVK
CKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVG
NLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTI
SLKMIPRLDYDRIKAHMSVKDWLAKRKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
RYSRKGFLFKSFAISAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
NVEVCEGELINLQGRILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
FEGDTGLIVRVEDNFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLEP
QTVGVIVRLERETFQVLNMHGKVVTVRHQSVTRKKDNRFAAALDSEQNNIHVKDIVKVID
GPHSGREGEIRILFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDMHNFTMGGFTP
MSPRISSPMHPSVGGLSGGFGAPGGGMGFGRGRRENDLIGQTVRISQGPYKGYIGMVKDA
TESTARVELHSTCQTISVDRQRLTTVDSQRSGSMTSDSGRTPMYGSQTPMYGPGSRTPMY
GSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYVFDEEPTPS
PQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPS
PQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHT
PGSGIEQNSSDWVTIDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVSISS
EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDDQLKILNLRFLGKLLEA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagtaacttctccgaggaggaggagagcgagcgcagcagcgac
gccgaggaggccgaggtagaggaggagcggcggagtgcggcaggcagcgagaaggaggaa
gagcccgaagaggaggaggaggaggaggagtacgatgaggaagaggaggaggaagatgat
gaccggccccccaagaagccccgtcatggaggcttcattctggatgaagctgatgtggac
gatgagtatgaggacgaggaccagtgggaagacggcgcagaagacattctggagaaagaa
gagatcgaagcctccaatatcgacaatgttgtcctggatgaagaccgctccggggctcgc
cgcctgcagaacctctggagggaccagcgggaagaagagctgggcgagtactacatgaag
aaatacgccaagtcctctgtgggagagactgtctacggcgggtctgacgagctctccgat
gacatcactcagcagcagctgctcccaggagtcaaggaccccaacctctggaccgtcaag
tgtaagatcggggaggaacgggccacagccatttccttgatgcgcaagttcattgcctac
cagttcacagatacgcccctgcagatcaagtcggtggtggccccagagcacgtgaagggc
tacatctacgtggaggcctataagcagacccacgtgaagcaggccatcgagggcgtgggc
aacctgcggctcggctactggaaccagcagatggtgcccatcaaagagatgaccgatgtc
ctcaaggtggtcaaggaggtggccaacctgaagccgaagtcctgggtccgcctcaagcgg
ggcatctacaaggatgatatcgctcaggtggattacgtggagcccagccagaacaccatc
tccctgaagatgatccccaggctggactatgatcgcatcaaggcccacatgagtgtgaaa
gactggctagccaaaaggaagtttaagcgaccaccgcagaggctgtttgatgccgagaag
atcaggtccctggggggcgatgtcgcctctgatggtgacttcctcatcttcgaggggaac
cgctacagccggaagggctttctcttcaagagctttgccatctctgctgtgatcaccgag
ggtgtgaagcccacgctctcggagctggagaagtttgaggaccagccagagggcatcgac
ttggaggtggtgacagagagcacagggaaggagcgggagcacaacttccagccgggcgac
aacgtggaggtgtgtgagggcgagctcatcaacctgcagggcaggatcctcagcgtggac
ggcaacaagatcaccatcatgcccaagcacgaggacctcaaggatatgctcgagttcccc
gctcaggagctccggaagtacttcaagatgggggaccacgtgaaggtgattgccggccgc
ttcgagggcgacacaggcctcatcgtgcgggtggaggacaactttgtcattctcttctca
gaccttaccatgcacgagctgaaggtgctcccaagggacctgcagctgtgctctgagacg
gcctcgggcgtggacgtgggcgggcagcacgagtggggcgagctggtgcagctggagccg
cagacggtgggcgtcatcgtgcggctggagcgcgagaccttccaggtgctgaacatgcac
ggaaaggtggtgaccgtcaggcaccagtctgtgacccggaagaaggacaaccgctttgca
gcagccctggactcggaacaaaacaacatccatgtgaaagacattgtcaaggtcatcgac
ggccctcactcgggccgggagggcgagattcgcattctgttccggagcttcgccttcctg
cactgcaagaagctcgtggagaacgggggcatgttcgtctgcaagacccgccacctggtg
ctggcagggggctcgaagccccgtgacatgcataacttcaccatgggtggcttcaccccg
atgagcccccggatcagcagtcccatgcaccccagcgttggaggtctgagtggtggcttt
ggtgccccgggcggtggcatgggctttggccgcggccgaagagaaaacgacctgattggc
cagactgtgcgcatctctcaagggccctacaaaggctacattggcatggtcaaggacgcc
accgagtctacggcccgtgtggagctgcactccacctgccagaccatctctgtggaccgc
cagcggctcaccactgtggactcgcagcgctctggcagcatgacctccgacagtggacgg
acccccatgtacggctcccagacacccatgtatggccctggctcccgcacgcccatgtat
ggctcccagacgcctctccaggacggaagccgcaccccacattacggctcgcagacgccc
ctgcatgacggcagtcgcacaccagcccagagtggtgcctgggacccgaacaatcctaat
acgccatcccgggctgaggaggagtacgagtacgtcttcgacgaggagcccaccccatca
ccccaagcttacggaggaacccctaacccccaaacgcctggctatcccgacccctcatcc
ccacaggtcaacccacagtacaacccacagacgccaggaacaccagccatgtacaacaca
gaccagttctccccctacgctgccccttccccacaaggctcctaccagcccagccccagt
ccccagagctaccaccaggtggcaccaagcccagccggctaccagaacacccactcgccg
gccagttaccaccccacgccatcacccatggcgtatcaggccagtcccagccccagccct
gttggttacagtccaatgacccccggagctccctccccgggtggctacaacccacacacg
ccagggtccggcattgagcagaactccagcgactgggtgaccattgacatccaggtgaag
gtgcgggacacctacctggacacgcaggtggtagggcagacaggcgtcatccgcagcgtc
acgggaggcatgtgttctgtgtacctgaaggacagcgagaaggtcgtcagcatctctagt
gaacacctggagcccattaccccgaccaagaacaacaaggtgaaggtcatcctgggtgag
gaccgggaagccaccggggtcctgctgagcatcgatggcgaggatggcattgtccggatg
gatctggatgatcagctcaagatcctcaacctccgcttcctggggaagctcctggaagcc
tga
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integrated database retrieval system
