Echinops telfairi (small Madagascar hedgehog): 101641970
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Entry
101641970 CDS
T08707
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03015
mRNA surveillance pathway
etf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101641970
09123 Folding, sorting and degradation
03018 RNA degradation
101641970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101641970
03041 Spliceosome [BR:
etf03041
]
101641970
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101641970
mRNA cycle factors
Stress granule specific factors
101641970
Spliceosome [BR:
etf03041
]
Complex C
Other components
Complex C specific factors
101641970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
POP1_C
HATPase_c
YflT
Motif
Other DBs
NCBI-GeneID:
101641970
NCBI-ProteinID:
XP_045143329
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MRAAAPAREAAPALAARFPPRGSPSGVQRWITLRPLDVYRIALYDIKIHGAQSPLHVSRL
HVSRLLEVHHRFKSLKEREAELRARAKEFTNVYIKNFGEDKDDQLLRDLFGKFGPGLSGK
VMTTESGKSKGFGLVSFERHEDAQKAVDEMNGKELNGKQIHVGRAQKKVERQTELKRKFE
QMKQDRITRYQAVNLYVENLDDGIDDERLHKEFSPFGTITSAKVTMEGGRSKGFGFVCFS
APEEATKAVREMNGRIVATKPLHVALAQHKEERQAHLTNQYMQRMASVRAGPAXVINPYQ
PAPPSGYFVAAIPQTQNRAAYHPPSQIAQLRPSPGWTAQGARAHPFQNTPGAIRPAAPKP
PFSTVRSASSQVPRVVSTQRVANTSTQTMGPRPVAAAAAAPAVHTVPQYKYAAGVRHPQH
LDAQPQVTMQQPSVHVQGQEPLTASMIASASPQEQKQMLDELLFPLIQAMHPSLAGKITG
MLLEIDNSEFLHMLXSPESLRSKVDEAVAVLQAHQAKEAVQKAVNSATGVPAV
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgagggcggctgctcccgctagggaggcggctccagctctggcagccaggttcccccca
agaggatcaccaagcggggtgcagcgatggatcacgctgagaccacttgatgtgtaccgg
attgccctttatgacatcaaaatccatggtgcccaaagcccgctccacgtcagccggctc
cacgtcagccggctcctggaagttcaccatcgatttaagtctcttaaagagcgagaagca
gaactcagagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaagat
aaggacgatcagctccttagggatctctttggcaagttcgggcctggcttaagtgggaaa
gtaatgactacagaaagtggaaaatccaaaggttttggacttgtgagctttgagaggcat
gaagatgcacagaaagctgtggatgaaatgaatgggaaggagctcaatggaaaacaaatt
catgttggtcgagctcagaaaaaagtggaacggcagacagaacttaagcgcaaatttgaa
cagatgaagcaagatagaatcaccagataccaggctgttaacttatatgtggaaaacctc
gatgatggtattgatgatgaacgtctccacaaagagttttctccatttggtacaatcact
agtgcaaaggttacgatggagggcggtcgcagcaaaggctttggctttgtatgtttctct
gcccccgaagaagccactaaagcagttagagaaatgaatggtagaattgtggccaccaag
ccattgcatgtagctttagctcagcataaagaggaacgccaggctcacctcactaaccaa
tatatgcaaagaatggcaagtgtgagagctggcccagccnccgtgatcaacccctaccag
ccagcacctccttcaggttacttcgtggcagctatcccacagactcagaaccgtgctgca
taccatcctccgagccaaattgctcaattaagaccaagtcctggctggactgctcagggt
gccagagctcatccgttccaaaatacgcctggtgctatccgcccagctgctcccaaacca
ccatttagtactgtgagatcagcttcttcacaggttccacgagtcgtgtcaacacaacgt
gttgctaacacatcaacacagaccatgggtccccgtcctgtagctgctgctgcagcagct
cctgctgtccataccgttccccagtataaatacgctgcaggagtccgccatcctcaacat
ctcgacgcacagccacaggtcaccatgcagcagccttctgttcatgtacaaggtcaggaa
cctttgactgcttccatgatagcatctgcctctcctcaagagcaaaagcaaatgttggat
gagctgctatttcctcttattcaagccatgcaccctagccttgctggtaaaatcactggc
atgctgttggagattgacaattccgaatttcttcatatgctanngtctccagagtctctt
cgctctaaggttgatgaagctgtagctgttctacaagcccaccaagctaaagaggctgtc
cagaaagcagttaacagcgccaccggtgttccagctgtttaa
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