Echinops telfairi (small Madagascar hedgehog): 101642080
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Entry
101642080 CDS
T08707
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101642080 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etf03041
]
101642080 (PRPF4)
Spliceosome [BR:
etf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101642080 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT140_1st
Ge1_WD40
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
101642080
NCBI-ProteinID:
XP_004712589
UniProt:
A0ABM0J174
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MASSRPSSTQATKPSKAPDDLVAPLVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAG
IEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPI
TLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKIARL
WIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHF
SPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASC
AADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEIL
HQEGHSMGVYDIAFHQDGSLAATGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGITFSPNG
YHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPTHGSFLLTGAYDNTAKVWTH
PGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWTAE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcacgaccgtcctccacgcaggcaaccaaaccttctaaggcacctgatgac
ttagttgctccccttgtgaagaaacctcacatctattatggaagtttggaagagaaggag
agggagcggctggccaaaggagagtctggaattttgggaaaagaaggacttaaagcagga
atcgaagcaggaaatattaacataacctctggagaagtgtttgaaattgaagagcacatc
agcgagaggcaggcggaagtcttggcggagtttgagagaaggaagcgagcccggcaaatc
aacgtttccacggatgactcggaggtcaaggcttgcctcagagccctgggggaacccatc
acgctatttggagagggccccgcggagagaagagaacgattaagaaatatcctgtcagtg
gttggtactgatgccttaaaaaagaccaaaaaagatgatgaaaaatctaagaagtccaaa
gaagagtatcagcagacctggtaccatgaagggccaaatagcctaaagatcgccaggctc
tggattgccaattactcactgcccagggcaatgaaacgcctggaagaggctcgtctccac
aaggaaataccggagacaacgaggacctctcagatgcaagagctgcacaaatctcttcgg
tctttgaacaacttctgcagtcagattggtgacgatcggcctatctcctactgtcacttt
agtcccaattctaagatgctggccaccgcttgctggagtgggctctgcaagctctggtct
gttcccgattgcaacctccttcatactcttcgaggccataacacaaacgtcggagcgatt
gtattccatcccaaatccacagtctccttggaccagaaggatgtcaacctggcctcatgt
gctgctgacggttctgtgaagctttggagcctggacagtgatgaaccggtggcagatatc
gagggccatacagtgcgcgtggcccgcgtgacgtggcacccctcaggacgcttcctgggc
accacctgctatgaccgctcctggcgtttgtgggatttggaggctcaagaggagatcctg
catcaggagggccacagcatgggtgtgtatgatattgccttccatcaagatggctctttg
gctgccactgggggactggatgccttcggtcgagtttgggacctgcgtacgggacgttgc
atcatgttcctagagggccacctgaaggaaatctatgggatcaccttctcccccaatggt
taccacatcgcaacgggcagtggtgacaacacctgcaaagtgtgggacctgcgacaacgg
cgctgtgtctacaccatccctgcccatcagaacttggtgactggagtcaagtttgagcct
acccacgggagcttcttgctcactggcgcttacgacaacacggccaaggtttggacccac
ccaggctggtcccccctgaagactctggctggccatgagggcaaagtgatgggcctggac
atctcttccgacgggcagctcatagccacttgctcatatgacaggaccttcaagctctgg
acggctgaatag
DBGET
integrated database retrieval system
