Echinops telfairi (small Madagascar hedgehog): 101642145
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Entry
101642145 CDS
T08707
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03082
ATP-dependent chromatin remodeling
etf04714
Thermogenesis
etf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101642145 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101642145 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101642145 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etf03021
]
101642145 (SMARCC1)
03036 Chromosome and associated proteins [BR:
etf03036
]
101642145 (SMARCC1)
Transcription machinery [BR:
etf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101642145 (SMARCC1)
Chromosome and associated proteins [BR:
etf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101642145 (SMARCC1)
PBAF complex
101642145 (SMARCC1)
GBAF(ncBAF) complex
101642145 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_2
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
101642145
NCBI-ProteinID:
XP_045153337
LinkDB
All DBs
Position
Unknown
AA seq
1008 aa
AA seq
DB search
MFMLMLLPIKPWRGWWCSFSSSRKMPLGSMSPIQPSPSSLRRFDLQNPSRMDRNVEMFMN
IEKTLVQNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTYTDEKSKASHHVYPYPASQE
DEEWLRPVMRKEKQVLVHWGFYPDSYDTWVHNSDVDAEIEDPPIPEKPWKVHAKWILDTD
VFNEWMNEEDYEVDESRKPVSFRQRISTKNEEPVRSPERRDRKAAANARKRKHSPSPPPP
TPTESRKKSGKKGQASLYGKRRSQREEEEQEDLTKGMEDPTPVPSIEEVALPKNVNPKKD
SENTPVKGGTVADLDEQDEETITTGGKEDEDPSKGDQSRSVDPGEDNVTEQTNHIIIPSY
ASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRN
LTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSP
QVPAAQQMLNFPEKNKEKPIDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEA
LEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNP
VMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPT
YGLESSCIAGTGPDEPEKLEGAEEEKMETDTDGQQAEKTENKSENEMSDSDKTHDGDGEK
RSEKEQDNDVSEDIKSEEKEAEENKELTDSCKERESNVGKKKVEHEISEGNVATAAAAAL
ASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQ
LLTERQNFHMEQLKYAELRARQQMEQQQHGQNPQAHQLSGGPGLAPLGAAGHPGMMPHQQ
PPPYPLMHHQMPPPHPPQPGQIPGPGPMMPGQPMPGRMLPTVAANIHPSASGPAPPGMPP
MPASILGPRVPLTAPNGMYPPPPQQPPPPPLPADGVPPAPGPPASAAP
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgttcatgctgatgctcctaccaataaaaccctggcggggctggtggtgcagcttctcc
agttccaggaagatgcctttgggaagcatgtcaccaatccagccttcaccaagctccctg
cggaggtttgacctacagaacccatccagaatggaccgaaatgttgaaatgtttatgaac
attgaaaagacattggtgcagaacaattgtctgaccagacctaacatctacctcattcca
gacatcgatctgaagttggctaataaattgaaagatatcatcaaacgacatcagggaacg
tacactgacgagaagtcgaaggcttcccaccacgtgtacccataccctgcctcgcaagaa
gacgaagagtggctgagaccggtgatgagaaaggaaaagcaggtgctagtgcattggggc
ttttatccagacagctatgatacttgggtccacaacagtgatgttgacgctgaaattgaa
gacccaccaattccagaaaaaccatggaaggttcatgcaaagtggattttggacactgat
gttttcaatgaatggatgaatgaggaggattatgaggtggatgagagtaggaagcctgtg
agttttcgacagcgaatttcaacgaagaatgaagagccagtccgaagccccgagagaaga
gaccggaaagctgcagcaaatgcccgaaagcggaaacactcgccgtccccccctccaccc
acacccacagaatcgcggaagaagagtgggaaaaagggccaggctagtctctatgggaag
cgcagaagtcagagagaggaagaagagcaagaagatcttaccaagggtatggaagatccg
acccctgtgcccagcatcgaggaagtcgcacttcccaaaaacgtaaacccaaagaaagat
agtgaaaatacacctgtgaaaggaggaacggttgcagatctagatgagcaggatgaagaa
acaatcacaacaggaggaaaggaagatgaagatccgagtaaaggggatcagagtcgatca
gttgaccctggtgaagataacgttacggagcagacgaatcacattatcatccccagctat
gcatcgtggtttgattataactgtattcacgttattgaacggcgagctcttccagagttt
ttcaatgggaaaaacaaatctaagaccccagaaatatacctggcatatcgcaattttatg
attgatacctatcggctaaatccccaagagtatttaactagcactgcttgtcggaggaac
ttgactggagatgtgtgcgctgtgatgagggttcatgcctttttagagcagtgggggctc
gttaattaccaagtggaccctgaaagtcgccctatggccatgggacctcctcctactcct
catttcaatgtcttggccgacacgccttctgggcttgtacctcttcaccttcgatcacct
caggttcctgctgctcaacagatgttaaattttcccgagaagaacaaggaaaaaccaatt
gatttgcaaaactttggtcttcgcaccgacatttactctaaaaaaaccttagcaaagagt
aaaggtgctagtgctggaagagaatggactgaacaggaaaccctactgctcctagaggcc
ctggagatgtacaaggatgattggaacaaagtgtcagaacacgttggaagtcggactcag
gatgaatgcatcctccactttttgaggcttcccattgaagacccctacctggagaattct
gacgcttcccttgggcctctggcctaccagcctgtccccttcagtcagtcaggaaaccca
gtcatgagcactgtggctttcttggcgtctgtggtggatccacgcgtggcatcggctgct
gcaaaagcagctttggaggaattttctcgtgtccgggaggaagtcccattagaattggtt
gaagcgcatgtcaaaaaagtacaagaagccgcacgggcctctgggaaagtggaccccacc
tatggtctggagagcagctgtattgcaggcacggggcctgacgaacccgagaagctggaa
ggagctgaagaggaaaaaatggaaacagacactgacggtcagcaggctgaaaagacagaa
aacaaaagtgaaaatgagatgagtgacagtgacaaaactcacgacggagacggtgaaaag
cgcagtgagaaggagcaggacaatgatgtcagtgaggacattaaatcagaagaaaaggag
gctgaggagaacaaagagctcactgattcatgtaaagagagagagagcaatgtcgggaag
aagaaagtcgaacatgaaatctcggaaggaaatgtagccacagccgcagcagctgctctt
gcctccgctgcaaccaaagccaagcatctggctgctgtggaagagaggaagatcaagtcc
ttggtggccctcctggttgagactcagatgaagaaactagagatcaagcttcgacatttt
gaagagctggaaacaatcatggacagagagaaagaggctctcgaacaacagaggcagcaa
ctgctcactgagcgccagaacttccacatggagcagctgaaatacgcggaattacgggcc
cggcagcaaatggagcagcagcagcatgggcagaaccctcaggcccaccagctttcagga
ggacctggcctggccccacttggagcggcagggcatcctggcatgatgccgcatcagcag
ccccctccatacccgctgatgcaccaccagatgccaccacctcatccgccccagccaggt
caaataccaggcccaggccccatgatgcctgggcaacctatgccaggccgtatgcttccc
accgttgcagccaacatccacccctctgcaagtggccccgcacctcctggtatgcctcca
atgccagcaagcatcttaggaccacgggtgcccctcacagcacctaacggcatgtatcct
ccaccaccacagcagccgccacccccaccactgcccgcagatggcgttcctcctgctcca
ggcccaccagcctcggctgcaccctag
DBGET
integrated database retrieval system
