Echinops telfairi (small Madagascar hedgehog): 101647433
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Entry
101647433 CDS
T08707
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf04151
PI3K-Akt signaling pathway
etf04510
Focal adhesion
etf04512
ECM-receptor interaction
etf04611
Platelet activation
etf04820
Cytoskeleton in muscle cells
etf04926
Relaxin signaling pathway
etf04933
AGE-RAGE signaling pathway in diabetic complications
etf04974
Protein digestion and absorption
etf05146
Amoebiasis
etf05165
Human papillomavirus infection
etf05205
Proteoglycans in cancer
etf05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101647433 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101647433 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101647433 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101647433 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
101647433 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
101647433 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
101647433 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
101647433 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101647433 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
101647433 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
101647433 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101647433 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
etf00536
]
101647433 (COL1A1)
Glycosaminoglycan binding proteins [BR:
etf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101647433 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
101647433
NCBI-ProteinID:
XP_004707116
LinkDB
All DBs
Position
Unknown
AA seq
1461 aa
AA seq
DB search
MFSFVDPRLLLLLAATALLTHGQDESLDGDIPSLSCVQDGLKYKNRDVWKPEPCRICVCD
KGTVLCDKVTCPDNDKCPGAIKNPGECCAICPDGEASPTDQETTGVEGPKGDTGPRGPRG
PAGPAGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSGGGGLSVPGPMGP
SGPRGLPGPPGAPGPQGFQGPAGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRAGE
RGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDSGPAGPKGEPGSPGENGAPGQMGP
RGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGESGPQGTRGS
EGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGGKGANGAPGIAGAPGFPGARGPSGPQGP
SGAPGPKGNSGEPGAPGNKGDAGAKGEPGPTGVQGPPGPAGEEGKRGARGEPGPSGLPGP
PGERGGPGSRGFPGSDGVAGPKGPAGERGSPGPAGPKGSPGESGRPGEAGLPGAKGLTGS
PGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGA
PGAIGAAGKDGEAGAQGPPGPSGPAGERGEQGPAGSPGFQGLPGPAGPPGESGKPGEQGV
PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQGA
PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGSPGDKGE
SGPSGPAGPTGARGAPGDRGEPGPAGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP
AGPTGAPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPSGK
EGGKGPRGETGPAGRPGEVGPPGPPGPSGEKGSPGSDGPAGAPGTPGPQGIGGQRGVVGL
PGQRGERGFPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGS
PGRDGSAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGA
RGPSGPQGARGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP
PGSAGSPGKDGLSGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFMPQ
PPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLK
MCHSDWKSGEYWIDPNQGCTLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKEKSH
VWYGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSIAYMDQQTGN
LRKALLLQGSNEIEIRAEGNSRFTYSVISDGCTSHTGAWGKTIIEYKTTKTSRLPIIDVA
PLDIGAPDQEFGFDISPVCFL
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacccccggctcctgctcctcttagcggccaccgctctcctgacg
cacggccaagatgagagcttagacggagacatcccctcactctcctgcgtccaagacggg
ctcaagtacaaaaaccgcgatgtctggaagcccgagccctgccggatctgcgtctgcgac
aaaggcaccgtgttatgtgataaagtgacgtgccccgataacgacaaatgtccaggcgcc
atcaaaaacccgggagagtgctgtgccatctgccccgacggcgaggcttcacccaccgac
caagaaaccacaggcgtagagggacccaaaggagacactggcccccggggccccagggga
cctgcaggacccgctggccgagatggtatcccaggacagcccggacttcccggacccccc
ggaccccccgggcctcctggaccccctggtcttggaggaaactttgctccccagatgtct
tatggctatgatgagaaatcaggtggaggagggttgtctgtgccgggccccatgggtccc
tctggtcctcgtggtctccctggcccccctggtgcacctggtccccaaggtttccaaggt
cctgctggtgagcctggcgagcctggagcctcaggtcccatgggtccccgtggcccccct
ggcccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtgctggcgag
cgtggacctcctgggcctcagggtgctcggggattgcccggaacagctggcctccctgga
atgaagggacacagaggctttagtggtttggatggtgccaagggagattctggtcctgct
ggtcccaagggtgagcctggtagccctggggaaaacggagcccctggccaaatgggtccc
cgtggtctgcctggtgagaggggtcgtcctggagcccctggacctgctggtgctcgaggc
aatgatggtgctactggtgctgctggaccccctggtcccactggccccgccggcccccct
ggcttccctggtgctgttggtgctaagggtgaatctggtccccaagggacccgaggctct
gaaggtccccagggtgttcgtggtgagcctggtccccctggccctgctggtgctgctggc
cctgctggaaaccctggtgctgatggacagcctggtggcaaaggtgccaatggtgctcct
ggcattgctggtgcccctggcttccccggtgcccgaggcccctctggacctcagggcccc
agcggcgctcctggccccaagggtaacagtggtgaacctggtgctcctggcaacaaaggg
gacgctggcgccaagggagaacctggtcccactggtgttcaaggcccccccggccctgct
ggtgaagaaggcaagcgtggagcccgaggtgaacccgggcccagtggcctgcccggcccc
cctggcgagcgtggtggacctgggagccgtggttttcctggttccgatggtgttgctggt
cccaagggtcccgctggtgagcgtgggtctcctggccctgctggtcccaaaggttctcct
ggtgaatctggccgtcctggtgaagctggtctgcctggtgccaaggggctgactggaagt
cctggcagccctggtcctgacggcaaaaccggcccccctggccccgctggtcaagatggc
cgccctggacccccaggcccccccggagctcgtggtcaggctggtgtgatgggattccct
ggcccgaaaggtgctgctggagagcccggcaaagctggagagcgtggtgtacccggagcc
cccggtgctattggtgctgctggcaaggacggagaagctggtgctcagggtccccctggc
cctagcggccccgctggcgagagaggtgaacaaggtcctgctggctcccccggattccag
ggtctccctggcccagctggtccccccggcgaatccggcaaacccggtgaacagggtgtg
cctggagacctcggtgcccccggcccctctggagcaagaggcgagagaggtttccccggc
gagcgtggtgtgcagggcccccctggtccggccggtccccgtggctccaatggcgctcct
ggaaatgatggtgctaagggagatgctggtgctcctggagcccccggtagccaaggtgcc
cctggccttcagggaatgcccggtgaacgtggtgcagctggtcttccaggccccaagggt
gacagaggcgatgctggtcccaaaggtgctgatggttctcccggcaaagacggcgtccgt
ggtctgactggccccattggtcctcctggccctgccggctcccctggtgacaagggtgaa
tctggtcccagcggccctgctggacccactggagcccgcggtgcccccggagaccgtggt
gaacctggtcctgccggccctgctggcttcgctggcccccctggtgctgatggccaacct
ggtgctaaaggtgaacctggtgatgctggtgctaaaggagatgctggcccccccggccct
gctggacccactggagcccctggccccattggtaacgtcggagctcctggacccaaaggt
gcccgtggcagcgctggtccccctggtgctactggtttccctggtgccgctggccgcgtg
ggcccccctggcccctctggaaatgctggaccccctggccctcctggcccttctggcaaa
gaaggcggcaaaggtccccgtggtgagactggccctgctggacgccccggtgaagtcggc
ccccctggtccccccggcccatctggagagaaaggatcccctggttctgatggacctgcg
ggtgctcccggaactcctggacctcagggtattggtggacagcgtggtgtggttggcctg
cctggtcagagaggagaaagaggcttccctggtcttcctggtccttctggcgaacccggc
aaacaaggtccttctggctccagtggtgaacgtggtccccccggccccatgggcccccct
ggattggccggacctcctggtgaatctggacgagagggctctcccggtgctgaaggctcc
cctggacgtgatggctctgctggccccaagggtgaccgtggtgagactggccctgctgga
cctcctggtgcccctggtgctcctggtgcccctggccccgttggccctgctggcaagaac
ggtgaccgtggcgagaccggtcctgccggtcctgctggtcccatcggccccgtgggcgct
cgtggcccctctggaccccaaggtgcccgtggtgacaagggtgagactggcgagcagggt
gacagaggcatgaagggtcaccgtggcttctctggtctccagggtcctcctggtcccccc
ggctctcctggtgagcaaggtccctctggagcttctggtcctgccggtccccgaggtccc
cctggctctgccggctcccctggcaaagacggactgagtggcctcccaggccccatcggc
ccccctggtcctcgaggtcgcactggtgatgccggccctgtgggtccccccggacctcct
gggcctcccggtccccctggccctcccagcggcggcttcgacttcagcttcatgccccag
ccacctcaagagaaggcacacgatggcggccgctactaccgggccgatgatgctaatgtg
gttcgggaccgggacctcgaggtggacaccaccctcaagagcctgagccagcagattgag
aacatccgaagccccgagggcagccgcaagaaccccgcccgcacttgccgggacctcaag
atgtgccactcagactggaagagcggagaatactggattgacccgaaccaaggctgcacc
ctggacgccatcaaggtcttctgcaacatggagacgggcgagacctgcgtgtaccccact
cagcccagcgtggcccagaagaactggtacatcagcaagaaccccaaggagaagagccac
gtctggtacggcgagagcatgaccgacggcttccagttcgaatacggcggcgagggctcc
gaccctgctgatgtggccatccagctgaccttcctgcgcctgatgtccactgaggcctcc
cagaacatcacctaccactgcaagaacagcatcgcctacatggaccagcagaccggcaac
ctcaggaaggcacttctcctccagggctccaacgagatcgagatccgggccgagggcaac
agccgcttcacctacagtgtcatctccgacggctgcacgagtcacaccggagcctggggc
aagacaatcatcgagtacaagaccaccaagacctcccgcctgcccatcatcgacgtggcc
cccttggacattggtgccccagaccaggaattcggcttcgacattagccctgtctgcttc
ttgtaa
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