Echinops telfairi (small Madagascar hedgehog): 101648996
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Entry
101648996 CDS
T08707
Symbol
CCDC88A
Name
(RefSeq) girdin
KO
K25392
girdin
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
etf03037
]
101648996 (CCDC88A)
Cilium and associated proteins [BR:
etf03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
101648996 (CCDC88A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
APG6_N
Motif
Other DBs
NCBI-GeneID:
101648996
NCBI-ProteinID:
XP_045150034
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MMSLPNVLIIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAA
HIQEVTHNQENVFDLQWMEVTDMPQEDMEPLLKNMALHLKRLIDERDEHSETIIELSEER
DGLHSLPHASASAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCK
QELEQMEIELKRLQQENMNLLSDARSARMYRDELDALREKAIRVDKLESEVSRYKERLHD
IEFYKARVEELKEDNQVLLETKAMLEDQLEGTRARSDKLHELEKESLQLKAKLHDMEMER
DMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELSEAPQKSLGHEVNELT
SSRLLKLEMENQSLTKTVEELRSSMGSVEGNTSKILKIEKENQRLNKKVQILENEIIQEK
QSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQTVSSLRQRSQISA
EARVKDIEKENKILHESIKETSSKLSKIEFEKRQIRKELEHYKEKGERSEELENELHHLE
KENELLQKKITNLKITCEKTEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQ
LDEENLELRRSVESLKCAGMRMAQLQLENKELESEKEQLKKGLEVMRASFKKTERLEVSY
QGLDTENQRLQKALENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENK
SLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVRIGNLEKENKTLFKEIGVCKE
SCIRLKELEKENKELVKRATIDGKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLN
KERLLQDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAALEARLEESTNYNQQLRQELKT
VKKNYEALKQRQDEERMVQSSPPVSGEAHKWERETQETTRELLKVKDRLIEVERNNATLQ
AEKQALKAQLRQLETQSSNVQAQMLALQRQTASLQEQNTTLQTQNAKLQVENSTLNSQST
SLMNQNAQLQIQQSSLENEHESVTKEREDLKSLYESLVRDHEKLALLHERQASEYESLIT
KHGTLKLAHKNLEVEHKDLEDRYNQLLKQKGQLEDLEKMLKVEQEKMLLENKTHEAVAAE
HKRLCGEHDRLTHTYSQLLKETEILQTDHKNLKSLLNNSKLEQTRLEAEFSKLKEQYQQL
DITSTKLNNQCELLSQLKGNLEEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQY
IDKLNELRRQKEKLEEKIMDQYKFYDPSPPRRRGNWITLKMRKLIKSKKDLNRERQKSLT
LTPTRSDSSEGFLQLPHQDSQDSSSVGSNSLEDGQTLGTKKSSMVALKRLPFLRNRPKDK
DKRKACYRRSMSMNDLVQSMVLAGGQWTGSSEHLEVPDDIAAGKRRQELGAMAFSATAIN
FSTVSSSAGFRSKQLVNNKDTTSFEDISPQGISDDSSTGSRVHGAQDSHCADGPPARGTS
AACRLPCPIGSSRPASLDSGRTSTSNSNNNASLHEVKGAVNNHSRPPSHSSGEFSLLHDH
DAWSSSGSSPIQYLKRQTRSSPMLPHKTSETLDSRAHHRMKTGSPGSEVVTLQQFLEESN
NLSSAQIKSSSQENLLDEVMKSLSVSSDFLGKDKPVSCGLARSVSGRTPGDFYDRRTTKP
EHFVRPCSRKTEDTHFLSPPGKPSLGAQGKAKSVKETSVPRQSKDSNNPYATLPRASSVI
STAEGTTRRISIHDFLTKDSRLPMSVDSAPATAASSVTAASNVDTVQESRISKSRSREQQ
SS
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgttgccaaatgtcttaatcatcggcaaaaatcccttctctgaacaaggcaca
gaagaagttaaaaagctgcttttacttttactgggttgtgcagttcagtgtcaaaaaaag
gaagaatttattgaaaggattcaaggattagattttgatacaaaagcagcagttgccgca
catattcaagaggtaacacataatcaggaaaatgtgttcgatttacaatggatggaagtg
actgatatgccccaggaagacatggaaccactcttgaaaaatatggcattgcatctaaag
agacttatagatgagagagatgaacattcagagacgataattgaactctctgaagagcga
gatggtctgcattctctaccccacgcttccgcttctgcacagtccccctgtggttctcca
ggcatgaagcggacagaaagtcgacagcatctgtcagtggaactggcggatgctaaggcc
aagataagaaggcttagacaggaactggaggaaaagactgagcagttgctggactgtaaa
caagaacttgagcaaatggaaatagaactaaaaaggctacaacaggagaacatgaatctg
ctttcggatgctcgttctgccagaatgtaccgagatgaattagatgcgcttagagaaaaa
gccatcagagtggataagcttgaaagtgaagtcagcagatacaaagagaggctacatgat
attgaattttataaggcaagagtcgaggaattaaaagaagacaatcaagttttattagaa
actaaagccatgttggaagaccaactagaaggaactcgagctcgttctgataaattacat
gaactagaaaaggagagtttacagttaaaggctaagctgcatgatatggagatggaacgt
gatatggataggaaaaaaattgaagaattgatggaagaaaatatgactttggaaatggca
caaaagcaaagtatggatgaatcattacatcttggctgggagctggaacagatatccaga
actagtgaactttctgaagcaccacagaaatccctgggccacgaggtaaatgagctcaca
tcaagtaggttattgaaattggagatggaaaatcaaagtttgacaaaaactgtggaagag
cttcggagtagtatgggttctgtagaaggcaacacatctaaaatcctcaaaattgaaaaa
gaaaatcaaaggcttaataaaaaggttcaaattcttgagaatgagattattcaagagaag
caaagtcttcagaattgtcagaatttaagcaaggatctaatgaaggagaaagctcagctt
gaaaaaacaatagaaacacttagagaaaattcagagagacagattaaaatactagaacag
gaaaatgaacatctgaatcaaacggtgtcctccctgcggcagcgctcccagataagtgcg
gaagcaagggtgaaagatattgaaaaagaaaacaaaattctccatgagtctatcaaagaa
acaagtagcaagctaagcaagattgaatttgaaaaaagacaaattagaaaagaactggag
cattataaagaaaaaggagaacggtccgaagaacttgagaatgagttacatcatcttgaa
aaagaaaatgaattgttgcagaaaaagataactaatttaaaaattacttgtgaaaaaact
gaggccttagaacaagaaaattcagagctagaaagagaaaacaggaaattaaaaaaaaca
ttggatagctttaaaaatctgacttttcagttagaatccctggaaaaagagaattcccaa
cttgatgaggaaaacttggaattgcgacggagcgtggagtccctgaagtgtgcaggcatg
agaatggcccagctacaattggaaaataaagagctggaaagtgagaaagaacaattgaag
aaggggctggaggtcatgagagcatcgttcaagaaaacagaacgtttagaagttagctac
cagggtttagatacagagaatcaaaggctacagaaagctctggaaaacagtaataaaaaa
atccagcagttagagagtgaactacaggatttagagatggaaaatcaaacactgcaaaaa
aacctagaagagttaaaaatatctagcaaaagactagaacagctagaaaaagaaaataag
tcattagaacaagagacctctcaactggaaaaggataagaaacaactggagaaggaaaat
aagagactcagacaacaagcagaaataaaggataccacactagaagaaaataatgtaaga
atcggaaatttggaaaaagaaaacaaaaccctattcaaagaaattggggtgtgtaaagag
tcctgcattcgcctgaaagaattagagaaagaaaataaggagcttgtgaaaagagcgact
attgatggaaaaacgctggtaacattacgagaggatttggtaagcgaaaaattgaagact
caacaaatgaacaatgatcttgaaaagttaactcatgagcttgaaaaaatagggttaaat
aaagagcgtctcttacaagatgaacagagtactgatgacaggtacaaacttttggaatca
aaattagaatccactctaaagaaatctctagaaataaaagaagaaaaaattgcagcttta
gaggctcgattagaagaatccacaaattataaccagcagttacgccaagaacttaaaaca
gtgaaaaaaaattatgaggctctcaagcagagacaagacgaggaaaggatggtgcagagc
tccccgccggtgtctggggaggctcacaagtgggagcgggaaacccaggaaaccacgcga
gagctactgaaagtgaaagacaggctcattgaagtcgaaaggaacaatgcgacactacaa
gcagagaagcaagcgttgaaagcccagctgaggcagctggagacccagagcagtaatgtg
caggcccagatgctcgcacttcagagacagaccgcgtcattacaggaacaaaataccact
ctgcagacacagaatgccaagctccaggttgaaaattcaacccttaattctcaaagtacc
tcccttatgaaccagaatgcacagctccaaatccaacaatcgtccttagaaaatgaacat
gaatctgtaaccaaggaaagagaagatctgaagtctctctatgagtctctcgtcagagac
cacgagaagctagcacttcttcatgagcgacaggcttcggagtatgaatccctcatcacg
aaacatggcactctgaagttggcccacaaaaatcttgaggtggagcataaagatctcgaa
gatcgttataatcagttactaaaacagaaaggacaactggaagatttggaaaaaatgctc
aaagtagaacaggaaaaaatgctgcttgaaaacaaaacccatgaggcggtggctgcagaa
cacaagaggctgtgcggagaacatgaccggttgactcatacatatagtcagcttttgaaa
gaaactgaaattttacaaacggaccataaaaatttgaagagtcttctaaataattccaaa
ctggaacaaacaagattagaggctgagttttctaagctaaaggaacaataccaacagttg
gatatcacatctaccaagctgaataaccagtgtgagttgctaagccaacttaaaggaaac
ttagaagaagaaaatcgacacctgttagatcaaattcagactttaatgctccagaacaga
acactgttggagcagaatatggaaagcaaggatctctttcatgtagaacaaagacagtac
attgacaagttgaatgagttaagacgtcaaaaggagaaattagaagaaaaaatcatggat
caatacaaattttatgatccatcacctcctagaaggagaggcaactggattaccctaaaa
atgagaaaattgatcaagtctaagaaagatttgaaccgggagcgtcagaaatctctgaca
ttaacccccacgcgttctgactccagtgaaggctttctccagcttccccaccaggacagc
caggacagctcttctgtgggttccaactcgttggaagacggccagacgctggggaccaag
aaaagcagcatggttgccctgaaaagactgccctttttgaggaacagaccgaaggataaa
gacaaaaggaaggcctgctaccgtcgttccatgtccatgaatgacctggtgcagtccatg
gtcctagcaggaggacagtggacaggtagttcggaacatttggaggttcccgatgatatt
gcagcgggtaaaaggagacaagaactgggagctatggccttctctgctacagccatcaac
ttttcaactgtcagctcttctgcaggcttcaggtccaagcagttggttaataataaagat
accacatcctttgaagatataagtccacaaggtatcagtgatgattccagtacgggatca
agagttcatggagcgcaggacagtcattgtgcagatggccctcctgcccgtggcacctcg
gcagcgtgcaggctcccttgtcccatcggttcttcaagaccagccagccttgacagtggc
agaacgtccactagcaatagcaataataacgcttcactccatgaagtcaaaggtgcagtt
aataaccacagccgtccaccaagccacagcagtggggaatttagcctgcttcatgatcat
gatgcgtggtccagcagtggtagcagtccgatccagtacttgaaaaggcagaccaggtca
agccccatgctcccgcacaaaacgtctgagacattggatagtcgagcacatcacaggatg
aaaactggctctcctggcagcgaagttgtcactctacagcagtttttggaagaaagcaac
aaccttagctcggcacagataaaatcctcaagtcaagagaatcttttagatgaagtcatg
aaaagtttgtctgtctcttctgactttttggggaaagacaaaccagttagctgtggtctg
gccaggtctgtaagtggaagaacccccggggacttttatgacagacggacaactaagcct
gaacattttgtgagaccttgttctcgaaagactgaagatactcacttccttagccctcca
ggaaaacctagcctgggcgctcaggggaaggccaagtcagtaaaagaaacttctgtgcca
cgacaatcaaaagatagtaacaacccgtacgctacgttacctcgtgcaagcagtgtcatc
tcaaccgctgaagggaccacccgaaggatcagcatccacgattttctgaccaaggacagt
aggctccctatgtcagttgattccgcaccagccaccgcggctagcagcgtgactgcagca
tctaatgtggacacagtacaagaaagcagaatttcaaaaagcaggtctagggagcaacaa
agctcctaa
DBGET
integrated database retrieval system
